Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc12g00012 ATGGCTGAAAATAAGCAATCCCAATTGAATGCCTCATACCATGGCCCTTCAATTCCTCCAAATAGTAACAACCTTAGAAGAAGAAGAAATTGTTGTTGCCGCATTTTCAGCATCTTGTGGAAGATTCTACTCTCAATCATAATCCTAATTGTTCTTTTGTTCATCATATCCTTTATCTTAGTCCAACCAAGACCCTTCAAATTCTATGTCACACAAGCAAATCTCACACAATTCAACTACACTTCTAGCACTAGTAAATCATTATTACATTACAACCTTGTACTAAATTTCACCGCACATAACCCAAACAAAAAGCTAGGAATCTACTATGACAAGGTTGAGGGCAATGTGTTCTACCAAGGTTATAGATTCTCCACCATTGATGTCATCACGTGGATGAATTCTTTCAGACAAGATTCTAAGCACACGGATGGGATGAGTGGTGTGTTCAAGGGGACAAAAGCTTTGGTTCTTGACAAAAGTCAACGCTCTAAGTTTGACCAAGACAAGAGAGATGGGGGGTTTGATATTCATGTGGAGCTGCATTTTGATATAAGGTTTAGGCTTGGTGATTTTATATTTAACAATATTAACTCCAAAGCTACGGTTAAGTGTGGGATTAAGGTTCCTTTGAGTGGTTCTAATGGGAAAGTGTTGGCTGCTAGATTTGAGCCAAAGAATTGCAATGTTAATATGAAGTGGGTTTAG 708 0.3799 MAENKQSQLNASYHGPSIPPNSNNLRRRRNCCCRIFSILWKILLSIIILIVLLFIISFILVQPRPFKFYVTQANLTQFNYTSSTSKSLLHYNLVLNFTAHNPNKKLGIYYDKVEGNVFYQGYRFSTIDVITWMNSFRQDSKHTDGMSGVFKGTKALVLDKSQRSKFDQDKRDGGFDIHVELHFDIRFRLGDFIFNNINSKATVKCGIKVPLSGSNGKVLAARFEPKNCNVNMKWV 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc12g00012 235 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 16 211 - -
Stsc12g00012 235 Pfam Late embryogenesis abundant protein 97 204 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc12g00012 Stsc-Chr12 86852 87916 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc12g00012 60 212 SNARE and Associated Proteins AT1G32270 31.373 6.62e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc12g00012 - - lja:Lj5g3v0839880.1 200.675