Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1291g00002 ATGTTCCTCTCCCACCGCCGCGCCGATGCACTCCGCTACACCTCCTCAGCCACTGCTACTGCTACAGACGCCGACATTGGGCCGCCCGGGGTTGTCTCCAGAGTTTCTTCCGTCGCCGCTGGACACTCTTCCTCCGCATCTCACTTGCTGTCCCAAGCCTCTTCTTGGCCTGCTGCCATCGCCACTGCTGCCGCTGCCGCCAATATTGGCTCCTCTGCGCTCGACATGAAGCGCTCTACTGAATCACTCTACCATCCAACCATTTTGGGTATCCCAAACACAGTTGGGCAAAGCGAAGCTTGGTATTCTGCAGACGCACTAGCTAAGCGCCCTAGATATGAAAGTGGAAGCAATTTGCCTATATATCCCCAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGACGGTGGAATCCCAGATTGGAAAGAGATTCCAACCACGGTTTCGGGTGAAACACTTCCTGAGAGAATAGGAGAACCGGACTGTCCATACTTTATTAAAACTCAGAGATGCAAATTTGGTTCAAAGTGCAAGTTTAATCATCCAAAAGGTTCCTCTGAAAATGCAGATACTGGCTTACCTGAGAGACCATCAGAGCCCCCCTGTTCGTTCTATATGAAGACTGGGAGATGTAAGTTTGGTTCTGCGTGTAAATTTCATCACCCGAAAGGCATCCAGATTCAGATGGCTGATGAACTGAGTTATAATGCTGAACAGACACAAGCAAATTCCATAATGGAAGGAGCAACAGGAGATACACAATCTTTCTTATCTCCACTATTGCAAAATAGCAAAGGCCTTCCAGGGGAAGTTGATTGCCCATTCTACATGAAAACTGGAAGTTGCAAGTATGGTGGTACATGTCGCTACAACCATCCAGACAGGAATGCAATTTATCCGCCAGTTGCTGCATTTGGTTCTTCTATTGCTGCATTTGGTTCTTCTATTGGATCTATAAATCCTTCTGTACCTATATATCAAGCATATGACCCAAGGTTGTCAAATCCAATGTCTCAACTTGGAGTGGCAGAAATTGTGTATCCTCAGCGTCCAGGACAGATTGAATGTGATTTCTATATGAAAACTGGTGAGTGCAAATTTGGGGAAAGATGCAAGTACCATCACCCTCTTGACCGATCAGCTTCATCAAACACTAAGCTCACTCCCGCGGGATTACCTAGGAGAGAGGGTGTTGGCACCTGTCCATATTACATGAAAACTAGCACTTGCAAGTTTGGTGCTACCTGCAAGTTTGACCACCCGCCACCCGGAGAAGTTATTGAGATTGCAAAGTCGCAAGGAACATCTGCAATTGATGGAGGGGAAGCAATTTCATGA 1401 0.4704 MFLSHRRADALRYTSSATATATDADIGPPGVVSRVSSVAAGHSSSASHLLSQASSWPAAIATAAAAANIGSSALDMKRSTESLYHPTILGIPNTVGQSEAWYSADALAKRPRYESGSNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPDGGIPDWKEIPTTVSGETLPERIGEPDCPYFIKTQRCKFGSKCKFNHPKGSSENADTGLPERPSEPPCSFYMKTGRCKFGSACKFHHPKGIQIQMADELSYNAEQTQANSIMEGATGDTQSFLSPLLQNSKGLPGEVDCPFYMKTGSCKYGGTCRYNHPDRNAIYPPVAAFGSSIAAFGSSIGSINPSVPIYQAYDPRLSNPMSQLGVAEIVYPQRPGQIECDFYMKTGECKFGERCKYHHPLDRSASSNTKLTPAGLPRREGVGTCPYYMKTSTCKFGATCKFDHPPPGEVIEIAKSQGTSAIDGGEAIS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1291g00002 466 ProSiteProfiles Zinc finger C3H1-type profile. 217 245 IPR000571 GO:0046872
Stsc1291g00002 466 ProSiteProfiles Zinc finger C3H1-type profile. 288 316 IPR000571 GO:0046872
Stsc1291g00002 466 SUPERFAMILY CCCH zinc finger 372 399 IPR036855 GO:0046872
Stsc1291g00002 466 SUPERFAMILY CCCH zinc finger 126 152 IPR036855 GO:0046872
Stsc1291g00002 466 FunFam Zinc finger CCCH domain-containing protein 37 81 162 - -
Stsc1291g00002 466 SUPERFAMILY CCCH zinc finger 221 244 IPR036855 GO:0046872
Stsc1291g00002 466 Gene3D - 370 457 - -
Stsc1291g00002 466 Gene3D - 124 213 - -
Stsc1291g00002 466 SUPERFAMILY CCCH zinc finger 293 316 IPR036855 GO:0046872
Stsc1291g00002 466 ProSiteProfiles Zinc finger C3H1-type profile. 177 205 IPR000571 GO:0046872
Stsc1291g00002 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 244 IPR000571 GO:0046872
Stsc1291g00002 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 421 443 IPR000571 GO:0046872
Stsc1291g00002 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 290 314 IPR000571 GO:0046872
Stsc1291g00002 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 374 397 IPR000571 GO:0046872
Stsc1291g00002 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 151 IPR000571 GO:0046872
Stsc1291g00002 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 180 204 IPR000571 GO:0046872
Stsc1291g00002 466 ProSiteProfiles Zinc finger C3H1-type profile. 371 399 IPR000571 GO:0046872
Stsc1291g00002 466 PANTHER PROTEIN PHOSPHATASE RELATED 114 263 - -
Stsc1291g00002 466 SUPERFAMILY CCCH zinc finger 420 443 IPR036855 GO:0046872
Stsc1291g00002 466 Gene3D - 215 325 - -
Stsc1291g00002 466 ProSiteProfiles Zinc finger C3H1-type profile. 125 153 IPR000571 GO:0046872
Stsc1291g00002 466 ProSiteProfiles Zinc finger C3H1-type profile. 416 444 IPR000571 GO:0046872
Stsc1291g00002 466 FunFam zinc finger CCCH domain-containing protein 37 369 457 - -
Stsc1291g00002 466 SUPERFAMILY CCCH zinc finger 182 205 IPR036855 GO:0046872
Stsc1291g00002 466 SMART c3hfinal6 371 398 IPR000571 GO:0046872
Stsc1291g00002 466 SMART c3hfinal6 416 443 IPR000571 GO:0046872
Stsc1291g00002 466 SMART c3hfinal6 217 244 IPR000571 GO:0046872
Stsc1291g00002 466 SMART c3hfinal6 288 315 IPR000571 GO:0046872
Stsc1291g00002 466 SMART c3hfinal6 125 152 IPR000571 GO:0046872
Stsc1291g00002 466 SMART c3hfinal6 177 204 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1291g00002 Stsc-Chr1291 2191 10662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1291g00002 401 455 C2H2 Transcription Factor Family AT3G02830 39.286 7.72e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc1291g00002 zf-CCCH 6.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1291g00002 - - pvu:PHAVU_011G180700g 663.685