Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1290g00005 ATGGCTGCCACAGGCATACCTTCCTCCTTCTTTTCTTCTTCAATCAACACCACTTCCTTCCGTTCCAAAACCATAACAGACCCTCCTCCTCCTCCTCTCATACCAATATCCTCTAACAACCGCAGATCATCACAGTCACAACAATGCTACTATTACTTTCTGGAACCTCTCTCATCAATTATTGGTGGTGGTGCTACAAAGTTGTGGGTGCCTAGAATTAGAACTACATCACCAGCTGTTGTTGCTTCACAACAAGAGTTTGCAGTGTCTGATGATGCTGCTGGTGGCTTAGTTGAAGAGGATGAAAAAGAAGAAGAAGAAGAAGAAGAGCAACAAGATGGTTCTGCTGCTGCTGCTGAATCCACTGTCAGCACTAAGCTTTATTTTGGGAATTTGCCGTACAGTGTTGACAGTGCACAACTTGCAGGGATAATTGAGGCTTATGGCAGTGCAGAACTAATTGAGGTTCTCTATGACAGGGACACTGGAAAAAGCAGAGGCTTTGCATTCGTGACGATGAGTTGCATCGAAGATTGTAAGGCAGTAATCGAAAATCTTGATGGAAAAGACTTCTTGGGCCGAACCTTACGGGTAAACTTCGCCGACAAACCAAAACCAAAAGAGCCGCTGTACCCTGAAACTGAGTACAAGCTATTTGTTGGAAACCTGTCGTGGACGGTAACCTCCGAGAGCCTCACTGAAGCGTTTCAAGAATATGGAAATGTGGTCGGAGCTAGGGTCTTATATGACGGCGAAACAGGAAGGTCACGCGGCTATGGCTTCGTTTGCTATTCGACAAAGGCAGAAATGGAAACTGCCCTTACATCCCTGAATGATGTGGAACTCGAGGGACGGGCTCTGCGTGTAAGCTTGGCGCAAGGAAAGCGTTCGCAAGGTTAA 900 0.4633 MAATGIPSSFFSSSINTTSFRSKTITDPPPPPLIPISSNNRRSSQSQQCYYYFLEPLSSIIGGGATKLWVPRIRTTSPAVVASQQEFAVSDDAAGGLVEEDEKEEEEEEEQQDGSAAAAESTVSTKLYFGNLPYSVDSAQLAGIIEAYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCKAVIENLDGKDFLGRTLRVNFADKPKPKEPLYPETEYKLFVGNLSWTVTSESLTEAFQEYGNVVGARVLYDGETGRSRGYGFVCYSTKAEMETALTSLNDVELEGRALRVSLAQGKRSQG 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1290g00005 299 Gene3D - 81 206 IPR012677 -
Stsc1290g00005 299 Gene3D - 207 299 IPR012677 -
Stsc1290g00005 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 288 IPR000504 GO:0003723
Stsc1290g00005 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 197 IPR000504 GO:0003723
Stsc1290g00005 299 CDD RRM2_NsCP33_like 217 292 - -
Stsc1290g00005 299 MobiDBLite consensus disorder prediction 19 41 - -
Stsc1290g00005 299 FunFam 31 kDa ribonucleoprotein, chloroplastic 83 206 - -
Stsc1290g00005 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
Stsc1290g00005 299 PANTHER OS02G0815200 PROTEIN 45 296 - -
Stsc1290g00005 299 SUPERFAMILY RNA-binding domain, RBD 124 208 IPR035979 GO:0003676
Stsc1290g00005 299 SUPERFAMILY RNA-binding domain, RBD 211 296 IPR035979 GO:0003676
Stsc1290g00005 299 FunFam 28 kDa ribonucleoprotein, chloroplastic 207 298 - -
Stsc1290g00005 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 203 IPR000504 GO:0003723
Stsc1290g00005 299 MobiDBLite consensus disorder prediction 95 114 - -
Stsc1290g00005 299 SMART rrm1_1 126 199 IPR000504 GO:0003723
Stsc1290g00005 299 SMART rrm1_1 217 290 IPR000504 GO:0003723
Stsc1290g00005 299 MobiDBLite consensus disorder prediction 91 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1290g00005 Stsc-Chr1290 8936 11992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1290g00005 112 295 Eukaryotic Initiation Factors Gene Family AT3G16380 32.512 3.07e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1290g00005 - - adu:107464158 372.474