Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc128g00010 ATGGAAGAAGCATTTAGGCGTCTCAACGGTATGCCTTTGTTCCAAGAACCCGACCCGCAACAGGACTCCACCGTCGCCGACCACCACAAGAAAACCAACAACAAGAGGCTGGCCAAGGACGCCGGTGCTGGAGGCGGATCTGCCGCGGGACCAATGAGGTACCGCGGCGTTAGGCGGAGGCCATGGGGACGTTATGCGGCGGAGATAAGGGACCCGCAGTCGAAGGAGCGGCGGTGGCTGGGAACATTCGACACGGCGGAGGAAGCTGCCTGCGCCTACGACTATGCCGCTCGAGCAATGAGAGGCGTGAAGGCGAGGACGAACTTCGTGTACCCGGATTCTCCTCCTCATCCTCACCATCCACACTTTCGTCACTCTGAACTGTTCCAAGCGTTCAACTTCCCGAAGCAGCAGTGCCACGTCAGCAAGTTAGTTCAGAACGGGCGCCATGGCGTAACTCAGCAGCAGCGAAACGGTGGCAGCAATTCTCATCCTCCCCTGAACATGCTTCTGTTCCGCGAGTTTCTGAATTCATCGAATCCGTGTTTGGTTTCTTCTTCTTCTGCTGCTGCTGATGGTGGTGGTTCCGGATCTAGTGGTGCTAATAATACTCCGTATCATGAGTTTTGCATGAAGGAGGGTGGTTCCTCTTGCTGCTTCAACGGTAACTGTTGCGGTGGTGGTGGTGGTGGTTCCAACAACAACGGAACTGGTGAAGGTGTTGAGGAAGAAGAATCGTTATTGGAGTTGTTCCCTAGAGAGTCTTCAGACTCTGGTCTGTTGGAAGAGATAGTTCAACGTTTCTTGCCCAAATCCAAAACCCTTCCAACAAACAAGAATTGTGACACCACTTTGAAGCTCAAAGCCGAGGCGCCACCTCTTTCCTTTCCTCAACAACAACAACAACAACAACAGGGCTATGATGGTGACAGCAGGATGATGATTAGGGGTTTTGATCATCAAAATTTTCCAATGCAGCAATTTGATTATGGCTTTAACCCTATTCATCACCATGGCTCATCAATGGGTATGCCCCTGGGAAATGAACATCAGTTGATGATGATGAACCCTACTACTATGCTGGAAGATGCATTTCAGTATCAACAACTTTTCAATGCCTTTGCAGCCAGGATGCAGAATGCTTAA 1146 0.5096 MEEAFRRLNGMPLFQEPDPQQDSTVADHHKKTNNKRLAKDAGAGGGSAAGPMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDYAARAMRGVKARTNFVYPDSPPHPHHPHFRHSELFQAFNFPKQQCHVSKLVQNGRHGVTQQQRNGGSNSHPPLNMLLFREFLNSSNPCLVSSSSAAADGGGSGSSGANNTPYHEFCMKEGGSSCCFNGNCCGGGGGGSNNNGTGEGVEEEESLLELFPRESSDSGLLEEIVQRFLPKSKTLPTNKNCDTTLKLKAEAPPLSFPQQQQQQQQGYDGDSRMMIRGFDHQNFPMQQFDYGFNPIHHHGSSMGMPLGNEHQLMMMNPTTMLEDAFQYQQLFNAFAARMQNA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc128g00010 381 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Stsc128g00010 381 MobiDBLite consensus disorder prediction 1 53 - -
Stsc128g00010 381 Gene3D AP2/ERF domain 52 111 IPR036955 GO:0003700|GO:0006355
Stsc128g00010 381 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 232 - -
Stsc128g00010 381 CDD AP2 53 109 IPR001471 GO:0003700|GO:0006355
Stsc128g00010 381 MobiDBLite consensus disorder prediction 22 37 - -
Stsc128g00010 381 Pfam AP2 domain 53 102 IPR001471 GO:0003700|GO:0006355
Stsc128g00010 381 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Stsc128g00010 381 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Stsc128g00010 381 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Stsc128g00010 381 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Stsc128g00010 381 SUPERFAMILY DNA-binding domain 53 110 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc128g00010 Stsc-Chr128 67794 68939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc128g00010 1 271 AP2-EREBP Transcription Factor Family AT1G24590 35.739 6.16e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc128g00010 AP2 8.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc128g00010 - - ahf:112736058 491.886