Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc128g00009 ATGGGCGGCGACAACCTCAAGTTCCTCTGCAGCTACCACGGTAAAATCCTCCCACGCTACCCCGACGGCAAGCTCCGCTACCTCGGCGGCCACACCCGCCTCCTCTCCCTCCCTCGCTCCACTCCCTTCTCCGAGCTGCTTCTCAAGCTTGGAGACCTCTGCGGTTCCCCTGTCACTCACCTCCGCTGCCAGCTACCTACCGAGGACCTCGACGCCCTCGTCTCCATCACCTCCGACGAGGATCTCTCTAACATTCTCGAGGAATACGACCGCCTTTCATCTTCCAAGATCAGACTCTTCCTTTCCTATTCCTCCTCCGCAAAAACTACCTCCTCCTCCTCCTCTTCCTCTTCTTCTTCCTCCTCACCGTCTTCGTTTCGCCCTCAAATGTGTAACGGAACCAAGAAATCCGCTGTCACTGCCAGAAATGCCACTTTCCCCTGCTACGGTTACCGTGTCCCGGGAAACGCCGGTGGTGTGGTTTACCTCGTAAACAACTGCAACCACTGGCACTAG 516 0.5717 MGGDNLKFLCSYHGKILPRYPDGKLRYLGGHTRLLSLPRSTPFSELLLKLGDLCGSPVTHLRCQLPTEDLDALVSITSDEDLSNILEEYDRLSSSKIRLFLSYSSSAKTTSSSSSSSSSSSSPSSFRPQMCNGTKKSAVTARNATFPCYGYRVPGNAGGVVYLVNNCNHWH 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc128g00009 171 PANTHER OS05G0427100 PROTEIN-RELATED 6 121 - -
Stsc128g00009 171 Gene3D - 24 104 - -
Stsc128g00009 171 SMART PB1_new 20 104 IPR000270 GO:0005515
Stsc128g00009 171 Pfam PB1 domain 22 102 IPR000270 GO:0005515
Stsc128g00009 171 SUPERFAMILY CAD & PB1 domains 22 112 - -
Stsc128g00009 171 MobiDBLite consensus disorder prediction 107 129 - -
Stsc128g00009 171 CDD PB1_UP2 9 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc128g00009 Stsc-Chr128 61341 62291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc128g00009 4 112 MAP Kinase Kinase Kinase AT3G46920 46.087 1.94e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc128g00009 - - gmx:100786933 177.178