Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1289g00001 ATGGCCACCAATGGAGAGCAGAACCAAACTTCTGATGCTGGAAGACACCAAGAAGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTATACCAGTACATTTTGGAGACCAGTGTGTACCCAAGAGAACATGAAGCCATGAAAGAGTTGAGAGAATTGACAGCAAAGCATCCATGGAACATCATGACAACCTCTGCAGATGAAGGACAATTCTTGAACATGCTCCTTAAACTCATCAATGCCAAGAACACCATGGAAATCGGTGTCTACACCGGTTACTCGCTTCTTGCAACTGCTCTTGCTCTTCCTGAAGATGGAAAGATCTTGGCCATGGACATTAACAAGGAGAACTACGAATTGGGTCTGCCAGTAATTAAAAAAGCCGGCGTTGACCACAAAATTACGTTCAAGGAAGGACCTGCTCTCCCTGTTTTGGACGAATTGGTTAAAGACGAGAAGAACCATGGAAGCTACGACTTCATTTTCGTGGACGCAGACAAGGACAACTACCTGAACTACCACAAGAGGCTGATCGATTTGGTGAAGGTTGGTGGTTTGATCGGCTACGACAACACCCTATGGAATGGCTCTGTGGTCGCACCTGCAGATGCACCAATGAGGAAGTACGTTAGGTACTACAGGGATTTTGTGTTGGAGCTTAACAAGGCCTTGGCTGTGGACCCCAGAATTGAGATCTGCATGCTCCCCGTTGGTGATGGAATCACTCTCTGCCGTCGGATCAACTGA 747 0.4712 MATNGEQNQTSDAGRHQEVGHKSLLQSDALYQYILETSVYPREHEAMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINKENYELGLPVIKKAGVDHKITFKEGPALPVLDELVKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGLIGYDNTLWNGSVVAPADAPMRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITLCRRIN 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1289g00001 248 Gene3D Vaccinia Virus protein VP39 22 248 IPR029063 -
Stsc1289g00001 248 PANTHER O-METHYLTRANSFERASE-RELATED 21 247 - -
Stsc1289g00001 248 Pfam O-methyltransferase 36 247 IPR002935 GO:0008171
Stsc1289g00001 248 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 23 247 IPR002935 GO:0008171
Stsc1289g00001 248 FunFam Caffeoyl-CoA O-methyltransferase 1 16 248 - -
Stsc1289g00001 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 246 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1289g00001 Stsc-Chr1289 9156 11573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1289g00001 4 248 Monolignol Biosynthesis Gene Families AT4G34050 87.755 3.96e-166 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1289g00001 K00588 - gmx:100811247 469.159