Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1287g00004 ATGATCATGGAGAATCTAGCAATACTTGTTATACTTTCTTTTGTGTTTATAAGCATTATCATCACCGATAATCTAGCAATACTTGTTATAGTTTCTTTTGTGTTTGTAACCATTATTCATCATATTCTGAAATCCAAACTAGGCACCAAAACACATAAATCAACCAAATTCCCACCAGGACCTAAACCTTTGCCAATCATAGGAAACATCTTAGAACTTGGCAACCAACCTCACAAAGAACTTGCTAAGCTTTCTCAAACATATGGACCAATAATGACTCTCAAACTTGGTAACATAACCACCATAGTTATCTCATCTCCTATGCTAGCCAAACAAGTTCTCCAAATATATGACCAAAATTTTTCCCATAGAACAATTCCGGATACCGTTAAGGTACTTGATCACCACTTGTATTCAGTGGGATGGTTGCCATCTTCTTCGCCTCAATGGAGGATCCTTAGGAGAGTTTGTGCTACCAGAGTGTTCTCTCCGCAACAGCTCGATTCCACGCAAGTTCTTCGCCAAAAGACACTGCATGAACTAATGAATTTTGTGAAGGAGAAAAGTGTAAAAGACGAAGTTTTAAATATCGGTGAGACCTGTTTTACAACGATACTTAATTCTGTATCGAACACTTTCTTTTCTGTCAACGTGGCTCATTACGGTGAATCTTGTAAGTCTCAAGAATTCAAGGATATAATTTGGGGCATTGGTGAAGAATCTGGGAGGCCTAATGTGGTGGATTTCTTCCCAATCTTTAGATTTCTTGATCCACAAGGTGCACGTGCAAGGATGACCAAGCATACTGAAAAGTTGATAGAATTCGTTGATGGTCTTACAGAAGAAAGATTGAAATCAAGGGCTCTAGAAAAGGATACTACCAATAAAAGATGCAATGATGTGTTAGATTCTATTTTAGATGTTATGTTGGAAGAAAATTCTCAAGTGACTCGTCTCCATGTTTTGCATCTCTTTCTGATTTTATTCATGGCTGGAGTAGATTCAACATCAATCACCATAGAATGGACAATGACAGAGTTACTACGTAATCCAGAAAAGCTAAGAAAACTTAGAGAAGAGCTTCAATGTGTTCTTGGCAAAGGTGAACAAGTTCTTGAAGAATCACACATATCAAAGCTTCCTTATCTAAGAGCAGTGGTTAAAGAAACTTTGCGCATGCATCCACCTGCCCCATTATTAGCACCACACAAGGCAAGCGAAGACGCTGAAATAAGTGGTTTCATGATTCGAAAAGATACACAAGTTTGGGTTAATATATGGGCCATGGGAAAAGATTCAAGTGTTTGGGAAAATCCAAATGAATTCATGCCTGAAAGATTCTTAGATAGTAAGATTGATATTCATGGTCGTGATTTTGAATTACTTCCCTTTGGTGCTGGAAGAAGGATGTGTCCTGGATTGCCATTGGCTTATAGAAGTGTGCATGTTGTGTTGGCTTCTCTTCTAAATGGGTATGATTGGAAGCTACCAAATGGAGAAGATTCAAAAGATTTGGATATGTCTGAGAGATTTGGACTTACTTTGCATAAGGCTCAACCTCTCCAAGCCATTCCCATAAAATCACAACAGTAA 1593 0.381 MIMENLAILVILSFVFISIIITDNLAILVIVSFVFVTIIHHILKSKLGTKTHKSTKFPPGPKPLPIIGNILELGNQPHKELAKLSQTYGPIMTLKLGNITTIVISSPMLAKQVLQIYDQNFSHRTIPDTVKVLDHHLYSVGWLPSSSPQWRILRRVCATRVFSPQQLDSTQVLRQKTLHELMNFVKEKSVKDEVLNIGETCFTTILNSVSNTFFSVNVAHYGESCKSQEFKDIIWGIGEESGRPNVVDFFPIFRFLDPQGARARMTKHTEKLIEFVDGLTEERLKSRALEKDTTNKRCNDVLDSILDVMLEENSQVTRLHVLHLFLILFMAGVDSTSITIEWTMTELLRNPEKLRKLREELQCVLGKGEQVLEESHISKLPYLRAVVKETLRMHPPAPLLAPHKASEDAEISGFMIRKDTQVWVNIWAMGKDSSVWENPNEFMPERFLDSKIDIHGRDFELLPFGAGRRMCPGLPLAYRSVHVVLASLLNGYDWKLPNGEDSKDLDMSERFGLTLHKAQPLQAIPIKSQQ 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1287g00004 530 Pfam Cytochrome P450 58 516 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1287g00004 530 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 31 527 - -
Stsc1287g00004 530 PRINTS P450 superfamily signature 462 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1287g00004 530 PRINTS P450 superfamily signature 471 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1287g00004 530 PRINTS P450 superfamily signature 331 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1287g00004 530 PRINTS P450 superfamily signature 385 396 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1287g00004 530 CDD CYP76-like 85 525 - -
Stsc1287g00004 530 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 464 473 IPR017972 GO:0005506|GO:0016705
Stsc1287g00004 530 PRINTS E-class P450 group I signature 425 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1287g00004 530 PRINTS E-class P450 group I signature 340 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1287g00004 530 PRINTS E-class P450 group I signature 471 494 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1287g00004 530 PRINTS E-class P450 group I signature 320 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1287g00004 530 PRINTS E-class P450 group I signature 109 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1287g00004 530 PRINTS E-class P450 group I signature 461 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1287g00004 530 PRINTS E-class P450 group I signature 85 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1287g00004 530 PRINTS E-class P450 group I signature 384 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1287g00004 530 FunFam Cytochrome P450 76C4 49 524 - -
Stsc1287g00004 530 Gene3D Cytochrome P450 48 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1287g00004 530 SUPERFAMILY Cytochrome P450 52 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1287g00004 Stsc-Chr1287 11660 14208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1287g00004 66 529 Cytochrome P450 AT2G45570 49.571 1.06e-168 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1287g00004 - - aip:107626003 694.501