Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc128600g00001 ATGAATGTGATTGATCAATGCTGGAGATGGAATCCCCAATGGAGGACCCACCGCACGCAACTAGCCAACTGCTCCGTTGGCTATGCCGGAAAAATGATCAACAACATTGGCACTGACGTCATCCATTATGAGGTTATAGACCCTACTGATGACCCTATAAACCCTAAGCCTGGTACCTTGAGATATGGAGCTTCTATGATTCAACAAAAAGTTTGGATCACATTCAAAAGAGACATGCAAATTACATTGGCAAAACCCCTTCTCATTAGTAGCTTTACCGCCATTGATGGTCGTGGCGCCAACGTCCACATTGCTCATAATGCATGCTTTATGATCTTTAAGGCAACGAACGTGATAATCCACAACGTTAGGATCCATCATTGTAAAGCACAAGGTCCGGGTTTGGTGGTGGGTCCAAATGGGAAGGTGATTCAGTTAGGTGAAGTTGATGGAGATGCAATTAGACTGGTGACTGCTTCAAAGATTTGGATTGATCATAACACACTCCATGATTGCCAAGATGGTCTTCTTGATGTTACTCGAGGTTCAACTGATGTAACTGTGTCCAATAACTGGTTCAGAAACCAAGATAAGGTTATGCTTCTTGGCCATGATGACGGATATATTAGAGACCAGAACATGAAAGTTACTGTTGTTTACAATCATTTTGGACCCAATTGCAACCAGCGCATGCCAAG 698 0.4312 MNVIDQCWRWNPQWRTHRTQLANCSVGYAGKMINNIGTDVIHYEVIDPTDDPINPKPGTLRYGASMIQQKVWITFKRDMQITLAKPLLISSFTAIDGRGANVHIAHNACFMIFKATNVIIHNVRIHHCKAQGPGLVVGPNGKVIQLGEVDGDAIRLVTASKIWIDHNTLHDCQDGLLDVTRGSTDVTVSNNWFRNQDKVMLLGHDDGYIRDQNMKVTVVYNHFGPNCNQRMP 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc128600g00001 232 SMART amb_all 78 232 IPR002022 -
Stsc128600g00001 232 SUPERFAMILY Pectin lyase-like 1 232 IPR011050 -
Stsc128600g00001 232 Gene3D - 1 232 IPR012334 -
Stsc128600g00001 232 PANTHER PECTATE LYASE 18-RELATED 1 232 IPR045032 GO:0030570
Stsc128600g00001 232 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Stsc128600g00001 232 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Stsc128600g00001 232 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Stsc128600g00001 232 Pfam Pectate lyase 90 232 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc128600g00001 Stsc-Chr128600 10 798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc128600g00001 32 232 Polysaccharide Lyase AT5G09280 72.139 3.33e-113 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc128600g00001 K01728 - gmx:100780437 421.394