Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc128329g00001 AGGAAGCTCGGTCAAGGTGGTTTCGGCGCGGTGTATAGGGGCTACTTTGCGGATTTGGATTTGGTTGTTGCTGTTAAGAAGATATCAGGCGGATCAACACAAGGGAAAAGAGAGTACATAACTGAGGTTAAAGTGATTAGCAGGTTAAGGCATCGGAATCTTGTGCAGCTCATAGGTTGGTGCCATGATCGAGGTGAGTTCCTTCTTGTTTATGAGTATATGCCAAATGGTAGCCTTGATTCTCATTTGTTTGGGAATAATAGGACTCCATTATCTTGGAACTTGAGGCACAAGATAGCTCTGGGTTTGGCTTCTGCTATTCTCTATCTTCATGAAGAATGGGAACAATGTGTACTGCATAGAGATATAAAACCAAGCAATGTGATGTTGGATTCTAGCTTCAATGTGAAGCTTGGTGATTTCGGGTTGGCTAAGCTCATAGATCATGAGTTAGGGTCTCAGACATCAGCTTTGGCTGGAACAATTGGATATATGGCTCCAGAATATATAAGCAGTCGAAGGGCGAGTAAGGAGTCAGATGTGTATAGCTTTGGGTTGGTTGCTTTAGAGATTGTGACTGGTAAGAAGGTGTTTGAGGTTTTAGATGATGAAGAGAGCCAAAAGGGGTTGGCTGAGTGGGTATGGGATCATTATGGAAGAGAAGAGCTTCATATGGTTGTGGATGAGAGACTGGTAAATGATTTTGATGAGAAAGAAGCAAAGTATTTGATGATTGTTGGGCTGTGGTGTTGTCATCCTGATAAGAATTTGAGACCATCAATAAGACAAGCAATTCAAGTGCTGAATTTTGAAGGTGCATTGCCACGGCTTCCAAGAAAGATGCCTGTTGCAATATATTATATTCCAACACCTCCT 876 0.4212 RKLGQGGFGAVYRGYFADLDLVVAVKKISGGSTQGKREYITEVKVISRLRHRNLVQLIGWCHDRGEFLLVYEYMPNGSLDSHLFGNNRTPLSWNLRHKIALGLASAILYLHEEWEQCVLHRDIKPSNVMLDSSFNVKLGDFGLAKLIDHELGSQTSALAGTIGYMAPEYISSRRASKESDVYSFGLVALEIVTGKKVFEVLDDEESQKGLAEWVWDHYGREELHMVVDERLVNDFDEKEAKYLMIVGLWCCHPDKNLRPSIRQAIQVLNFEGALPRLPRKMPVAIYYIPTPP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc128329g00001 292 Pfam Protein kinase domain 1 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc128329g00001 292 PANTHER - 1 269 - -
Stsc128329g00001 292 ProSitePatterns Protein kinases ATP-binding region signature. 3 27 IPR017441 GO:0005524
Stsc128329g00001 292 Gene3D Phosphorylase Kinase; domain 1 3 74 - -
Stsc128329g00001 292 FunFam ABL protein 36 77 - -
Stsc128329g00001 292 SUPERFAMILY Protein kinase-like (PK-like) 1 287 IPR011009 -
Stsc128329g00001 292 ProSiteProfiles Protein kinase domain profile. 1 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc128329g00001 292 SMART serkin_6 1 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc128329g00001 292 FunFam Lectin-domain containing receptor kinase A4.3 74 288 - -
Stsc128329g00001 292 CDD STKc_IRAK 3 269 - -
Stsc128329g00001 292 Gene3D Transferase(Phosphotransferase) domain 1 75 289 - -
Stsc128329g00001 292 ProSitePatterns Serine/Threonine protein kinases active-site signature. 118 130 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc128329g00001 Stsc-Chr128329 21 897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc128329g00001 1 287 Receptor kinase-like Gene Family AT5G10530 68.512 2.12e-143 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc128329g00001 Pkinase 6.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc128329g00001 - - adu:107487060 545.043