Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc127524g00001 TTTGGTGTTGATGAATCAAAGATGATGGAAAGGCTCTGGGGTGAAAACTTCTTTGATCCTGCTACAAAGAAATGGACTAGCAAGAACACCGGTTCTGCTACATGCAAGCGTGGGTTTGTCCAGTTCTGTTATGAGCCCATCAAGCAGATCATCAACACTTGTATGAATGATCAGAAGGATAAGCTGTGGCCTATGTTGCAGAAGTTAGGAGTCACCATGAAATCTGAGGAGAAGGACTTGATGGGTAAAGCATTGATGAAACGTGTCATGCAAACCTGGCTCCCAGCCAGTACCGCACTCTTGGAAATGATGATATTTCACCTTCCATCTCCGGCTAGGGCCCAAAAGTATCGTATGATTCCTGCATCTGACAAGGGTCGTTTCTTTGCTTTCGGTCGTGTTTTCTCCGGAAGGGTGTCAACTGGTCTCAAGGTAAGAATTATGGGACCAAATTACGTTCCTGGTGAGAAGAAAGATCTGTACGTTAAAAGTGTGCAAAGGACTGTCATTTGGATGGGAAAGAGGCAAGAAACAGTGGAGGACGTTCCTTGTGGTAACACAGTTGCCATGGTTGGTTTGGATCAATTTATCACCAAGAATGCCACATTGACAAATGAGAAGGAAGTCGATGCCCACCCCATCCGAGCCATGAAGTTCTCTGTCTCACCTGTCGTGCGTGTTGCTGTTCAGTGTAAGGTTGCATCGGATCTTCCTAAGCTTGTTGAAGGTCTCAAGAGGCTGGCCAAATCCGATCCTATGGTTCTCTGTACTATTGAAGAATCTGGTGAGCACATCGTTGCTGGTGCTGGGGAGCTTCATTTGGAAATTTGTTTGAAGGACTTGCAAGAAGATTTCATGGGAGGAGCTGAGATTATCAAGTCAGACCCT 888 0.4572 FGVDESKMMERLWGENFFDPATKKWTSKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASTALLEMMIFHLPSPARAQKYRMIPASDKGRFFAFGRVFSGRVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCTIEESGEHIVAGAGELHLEICLKDLQEDFMGGAEIIKSDP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc127524g00001 296 CDD EF2_II 119 206 - -
Stsc127524g00001 296 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 119 296 - -
Stsc127524g00001 296 SUPERFAMILY Translation proteins 107 212 IPR009000 -
Stsc127524g00001 296 FunFam Translation elongation factor 2 222 296 - -
Stsc127524g00001 296 Gene3D Elongation Factor G (Translational Gtpase), domain 3 222 296 - -
Stsc127524g00001 296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 109 IPR027417 -
Stsc127524g00001 296 CDD EF2_snRNP_III 223 295 - -
Stsc127524g00001 296 Gene3D Translation factors 109 217 - -
Stsc127524g00001 296 Pfam Elongation Factor G, domain III 223 285 IPR041095 -
Stsc127524g00001 296 SUPERFAMILY EF-G C-terminal domain-like 220 296 IPR035647 -
Stsc127524g00001 296 FunFam Translation elongation factor 2 111 220 - -
Stsc127524g00001 296 Gene3D Yeast translation eEF2 (G' domain) 1 94 - -
Stsc127524g00001 296 FunFam Elongation factor 2 1 94 - -
Stsc127524g00001 296 Pfam Elongation factor Tu domain 2 130 203 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc127524g00001 Stsc-Chr127524 14 1099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc127524g00001 1 296 Eukaryotic Initiation Factors Gene Family AT1G56070 83.232 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc127524g00001 K03234 - tcc:18594569 575.474