Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc126g00013 ATGGTTGACCATTTCATTCTTTGCATTGATCCTATTATGCCCTCTTCTTTACCATCACCACCACCACCCCCTCATGATCACATTCATCATGATGCTGCTCTGCCTCTGCTCGTGGAATGTAGAATATGTCAGGAAGAAGATCACGTCCATGCCATGGAGGCCCCTTGTTCTTGTAATGGCACTCTCAAGTTTGCTCATAGGAAGTGCATCCAAAAATGGTGCAACAAGAAAGGAAATACAATATGTGAAATCTGCAATCAGGTATTTTCACCAAACTATTCTCTTCCAATAGTCAGAAGCAATGACATTATAGCAATTGATCTAAGGCAAGAATGGGAGCGTAATACAGATCTCCGTGTTGCTCTAACTTCGGCAGAGAACCAGTTACTGCAAAGTGAATATGAAAACTATGCTATCACACAAATCAGTAGCATTGCTTGTGTCCGCTCTGCTACTCTCATCTTGCTGATAGTTTTGCTTGTGCGCCAAGCCTTAATGATTACAACGAGCTCTGCAACCAGGAGCGATTCATCAAGAATATTTGATTTTGAGATGTCACTCCTTCAATTTGCCGGCATTCTTTTGCCGTGTTGCGCGATGGCACGTTCCTGGTATCTCATACATAACAGAAGAAGACAGGGTTAA 645 0.4264 MVDHFILCIDPIMPSSLPSPPPPPHDHIHHDAALPLLVECRICQEEDHVHAMEAPCSCNGTLKFAHRKCIQKWCNKKGNTICEICNQVFSPNYSLPIVRSNDIIAIDLRQEWERNTDLRVALTSAENQLLQSEYENYAITQISSIACVRSATLILLIVLLVRQALMITTSSATRSDSSRIFDFEMSLLQFAGILLPCCAMARSWYLIHNRRRQG 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc126g00013 214 CDD RING_CH-C4HC3_MARCH 40 86 - -
Stsc126g00013 214 ProSiteProfiles Zinc finger RING-CH-type profile. 32 92 IPR011016 GO:0008270
Stsc126g00013 214 Pfam Protein of unknown function (DUF3675) 91 204 IPR022143 -
Stsc126g00013 214 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 213 IPR033275 -
Stsc126g00013 214 SUPERFAMILY RING/U-box 39 89 - -
Stsc126g00013 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 91 IPR013083 -
Stsc126g00013 214 Pfam RING-variant domain 40 85 IPR011016 GO:0008270
Stsc126g00013 214 SMART ringv_2 39 86 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc126g00013 Stsc-Chr126 75462 78675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc126g00013 31 135 C3H Transcription Factor Family AT2G37950 27.778 1.39e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc126g00013 - - lang:109333136 287.345