Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc126g00012 ATGGCATCAACTGACCAATCACCATCTTTGGAGATATTAGTTAGAACACCTGAAGAGTTCTCAATCTGGACTGGACCCCCATTTAACAATGGTCAACCTGGTGTCAAGCTTGAGAAAGTTAGCTGCGTGAATGCGAAATTCAGCGATGATGGATCTAGACTCTTGGTGACGAAATCCAACTCAGTGATTAGTATATATGACTGCAAGACTGCCAAAGAGATTAGGTCTTTTGAAGTCCCAAACGTCACTTCGGCTATCTTGTCCCCCTATGGAACTTTTTTGCAAACATTTCAAAAGCCTTCGGCACCACAAGAGAAGAATGTCACACTGTGGAAAACAGAGACTGGTGATCCTGTTTATCAACACTCCCAAAAGAATCTAACAAAAACCACTTGGCCTGCTATTCAATTCAGCTCTGATGAGGTCACTGCATGCCGGATGGCGACTAATGAGGTGCAGTTTTTTGACACAAGGGATTTCTCTAAGGGGATCATTGATCGATTAAGAGTTCCAGGAGTTGCTGCAATTGAGCTTTCTAGTGCACCTGGGTCTCATGTAGCTGCATATGTGCCAGAATCCAAGTTTTACGTTGGCTGTCGTCACACAACCTTACATGGGTCCAAAGACTTCGTTGCGTCGTGGCCATGTATGGGGACGCGACATTGTTTTAAGTTGTTTGTTGCAAGACCAACAACTCTCCTCGTTTATCCGAGCTTGGGACCGGCTATTCAAGCTGTTGCTCGGCGGAGTTTTTTCCGATGTTCAACAACCCAACTTAAATGGAATCATGGCTCTACCGGTCTTTTAGTGCTGGTGCAGTCAGATGTTGACAAAACTAACCAGAGTTACTATGGGGAATCAAAGTTATTCTATCTAACAATAGATGGAAAGCATGAAGGGCTTGTGCCTCTTTCTAAAGAGGGTCCAGTTCATGATGCTCAGTGGTCATATTCTGGCTTGGAATTTGCTGTAGTATATGGTTTTATGCCTGCTAAAGCAACTTTGTTTGACAAGAAGTGCAATCCTCTGCTGGAGCTCGGAACCGGTCCTTATAACACCATTAGATGGAACCCGAAAGGGAAATTTTTATGTTTGGCTGGCTTTGGAAACTTGCCTGGCGATATGGTATTCTGGGATTATGCGGATAAGAAACAACTTGCAGCAACTAAGGCTGAATGGTCTGTGACAAGTGAATGGTCTCCAGATGGGCTCTATTTCATGACAGCGACGACAGCTCCGAGGCTTCAAGTTGACAATGGGATCAAGGTCTTTCACTACAATGGGTCACTGTACTTCAAAAAGATGTTTGACAAGTTGTTCCAGGCTGACTGGAAACCGGAGTCAGCGAATAAGTTTGGTGACATCACCGAATTAATCAAGTCTCTTAATTTGGGTAAAGTCGAAGATAAAAAGCCATCAGGTCCAGGACCAAAATCGGCCCAGGCTTCTAACAAACCGCCTTCTACCAATCCCACTGCACAAAAGCCTGCCGCGTATCGCCCACCACATGCTAAGAATGCCGCTGCAGTTCAGGCTGAGTTACTTGGAATAGGAGAGAGCAGCCCTGCAGGAATGAGCAAGAATGCATTGAAGAACAAGAAGAAGAGGGAGAAACAAAAGGAGAAAAAGGCTGCTTCGGATGGCAGTTAG 1650 0.4497 MASTDQSPSLEILVRTPEEFSIWTGPPFNNGQPGVKLEKVSCVNAKFSDDGSRLLVTKSNSVISIYDCKTAKEIRSFEVPNVTSAILSPYGTFLQTFQKPSAPQEKNVTLWKTETGDPVYQHSQKNLTKTTWPAIQFSSDEVTACRMATNEVQFFDTRDFSKGIIDRLRVPGVAAIELSSAPGSHVAAYVPESKFYVGCRHTTLHGSKDFVASWPCMGTRHCFKLFVARPTTLLVYPSLGPAIQAVARRSFFRCSTTQLKWNHGSTGLLVLVQSDVDKTNQSYYGESKLFYLTIDGKHEGLVPLSKEGPVHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYADKKQLAATKAEWSVTSEWSPDGLYFMTATTAPRLQVDNGIKVFHYNGSLYFKKMFDKLFQADWKPESANKFGDITELIKSLNLGKVEDKKPSGPGPKSAQASNKPPSTNPTAQKPAAYRPPHAKNAAAVQAELLGIGESSPAGMSKNALKNKKKREKQKEKKAASDGS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc126g00012 549 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2A 10 545 IPR011387 GO:0003743|GO:0006413
Stsc126g00012 549 FunFam Eukaryotic translation initiation factor 2A 235 454 - -
Stsc126g00012 549 Pfam Eukaryotic translation initiation factor eIF2A 249 442 IPR013979 -
Stsc126g00012 549 FunFam Eukaryotic translation initiation factor 2A 30 185 - -
Stsc126g00012 549 PIRSF Transl_init_eIF2A 227 549 IPR011387 GO:0003743|GO:0006413
Stsc126g00012 549 PIRSF Transl_init_eIF2A 4 198 IPR011387 GO:0003743|GO:0006413
Stsc126g00012 549 MobiDBLite consensus disorder prediction 477 495 - -
Stsc126g00012 549 Coils Coil 527 547 - -
Stsc126g00012 549 Gene3D - 28 426 IPR015943 GO:0005515
Stsc126g00012 549 SUPERFAMILY DPP6 N-terminal domain-like 40 427 - -
Stsc126g00012 549 MobiDBLite consensus disorder prediction 466 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc126g00012 Stsc-Chr126 68882 74464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc126g00012 88 446 Eukaryotic Initiation Factors Gene Family AT5G27640 24.574 1.44e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc126g00012 K15026 - gmx:100811589 823.157