Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc126g00010 ATGGCAGCAGCAGCACAAGTAGTACCTGAATTGGAGCATCCTAACAAGGCTTTCGGTTGGGCTGCTAGGGATCCCTCTGGTCATCTATCTCCTTTCAATTTCTCTAGAAGAGAAACTGGTGAGAAGGATGTGGCATTCAAAGTGTTGTACTGTGGGATTTGTCACTCGGATCTCCACATGGTGAAGAACGAATGGGGCTTTTCCATGTACCCATTGGTCCCTGGGCATGAAGTTGTTGGTGTTGTGACAGAAGTGGGAAGCAAGGTTCAAAAGTATAAGATTGGGGACAGAGTAGGGGTGGGATGCTTGGTTGAATCCTGCAGAAATTGCCAAAACTGCAATGATAATCTTGAGAATTATTGCTCCTCATATACTCTAACATATGGTGCAAAATCCCGTGATGGAAGCATCACATATGGAGGCTACTCTGATTCAATGGTTGTTGATGAACACTTTGTGGTTCGAATTCCTGATGAGTTGCCTCTTGATGCTGCTGCTCCTTTGCTATGCGCTGGGATCACAGTGTATAGCCCCCTCAGATATTTTGGACTAGACAAACCTGGCTTGCACGTTGGTGTAGTTGGTCTTGGCGGGTTAGGACACGTGGCAGTCAAATTTGCCAAAGCTTTTGGTGCTAAAGTCACTGTTATCAGTACCTCACCCCACAAAAAGGAGGAAGCAATTCAACACTTGGGAGCTGATTCATTTTTGTTAAGTCGCGACCAAGATCAGATGCAGGATGCAAAGGAAAGCTTGGATGGTATCATAGACACAATTTCTGCTGTTCATTCTCTGGTGCCTCTCATTGGTTTATTGAAGTCTCATGGCAAACTTGTAATGGTTGGAGCACCTGATAAGCCTCTAGAGCTGCCAGTCATTCCTTTACTCATGGGGAGAAAGCTAATAGCTGGTAGTGCCATTGGAGGGTTAAATGAGACTCAGGAGATGATTGATTTTGCTGCAAAACACAATGTGAGACCTGATATCGAAGTCATTCCTATTGATTATGTCAACACTGCAATGGAGCGCCTCCTTAAATCAGATGTCAAGTATCGCTTCGTCATTGACATTGGAAACACTCTGAAACAAACCTCTTAA 1098 0.4454 MAAAAQVVPELEHPNKAFGWAARDPSGHLSPFNFSRRETGEKDVAFKVLYCGICHSDLHMVKNEWGFSMYPLVPGHEVVGVVTEVGSKVQKYKIGDRVGVGCLVESCRNCQNCNDNLENYCSSYTLTYGAKSRDGSITYGGYSDSMVVDEHFVVRIPDELPLDAAAPLLCAGITVYSPLRYFGLDKPGLHVGVVGLGGLGHVAVKFAKAFGAKVTVISTSPHKKEEAIQHLGADSFLLSRDQDQMQDAKESLDGIIDTISAVHSLVPLIGLLKSHGKLVMVGAPDKPLELPVIPLLMGRKLIAGSAIGGLNETQEMIDFAAKHNVRPDIEVIPIDYVNTAMERLLKSDVKYRFVIDIGNTLKQTS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc126g00010 365 FunFam Cinnamyl alcohol dehydrogenase 171 327 - -
Stsc126g00010 365 SMART PKS_ER_names_mod 27 355 IPR020843 GO:0016491
Stsc126g00010 365 CDD CAD1 18 356 IPR047109 GO:0016616
Stsc126g00010 365 Gene3D - 20 357 - -
Stsc126g00010 365 PANTHER ALDEHYDE REDUCTASE 9 360 IPR047109 GO:0016616
Stsc126g00010 365 Pfam Zinc-binding dehydrogenase 198 321 IPR013149 -
Stsc126g00010 365 Pfam Alcohol dehydrogenase GroES-like domain 42 155 IPR013154 -
Stsc126g00010 365 FunFam Putative cinnamyl alcohol dehydrogenase 6 328 357 - -
Stsc126g00010 365 FunFam Uncharacterized protein 20 170 - -
Stsc126g00010 365 SUPERFAMILY GroES-like 23 188 IPR011032 -
Stsc126g00010 365 Gene3D - 171 327 - -
Stsc126g00010 365 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 75 89 IPR002328 GO:0008270|GO:0016491
Stsc126g00010 365 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 160 325 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc126g00010 Stsc-Chr126 65420 67477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc126g00010 15 362 Monolignol Biosynthesis Gene Families AT4G37990 71.552 9.88e-174 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc126g00010 K23232 - gmx:100816901 602.438