Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1261g00001 ATGGTGAGAACCCCTAATTATTCTTGCGACAAAAGTGGAGTCAGGAAAGGTACATGGTCTCTAGAGGAAGATATGAAGCTAACTGCTTATCTTACTAGATATGGCTGCTGGAATTGGAGCCAACTCCCAAAATATGCAGGCCTAACAAGGTGTGGGAAGAGTTGCAGGTTGAGGTGGTTGAATTATTTAAGGCCTAATCTCAAAAGAGGGAACTTCACTCAACAAGAAGAAGATATCATCGTCAGATTGCACAACAAGCTCGGTAATAGATGGTCCTCAATTGCGACTGAATTGCCAGGAAGAACAGATAACGAAATCAAGAACTATTGGCACTCAACTCTCAAGAAGCGCTTGCAACAAAAAGATGTTATTAGTAATAATAATAATAAAGAGTCATCCAAATCATCATCATCACAAGAATGGAACCGTGAGAGGGACATGGTGGTGGTTCTGAAGAATAATAATGTGGCTGTTGATCATGATCCTTCAGAATGCAGTACTACCCCATCATCACCACTATCTTCATCTTCTAGTGATGAATTTTGTTCTGTCACTACTTCAGACCACAACAACACAACAGCGACTGATAAAGAAAATTTGGTGCTGCTGGAAGATGATGACTTGTCTTTTCTGGAAAAATTATGGACAGAACCATATACGATGGTTGGAGAAGAAATTTATCATCACCAAATAATAATAAATGAAAAATTTTCAAACAATAATTGTAATAATAATCATGATCACTTCCAGCAGAGTCCAGATTCAAAAGTGAAGATTATTCCGGATGCTAGTAGTGATACCACCAATTTTGATTATCACATAGAGGCAATGATTCAAAACTTTTGGTCACAGCCATATATTAAAGACATGTCACATATACAATGA 885 0.3763 MVRTPNYSCDKSGVRKGTWSLEEDMKLTAYLTRYGCWNWSQLPKYAGLTRCGKSCRLRWLNYLRPNLKRGNFTQQEEDIIVRLHNKLGNRWSSIATELPGRTDNEIKNYWHSTLKKRLQQKDVISNNNNKESSKSSSSQEWNRERDMVVVLKNNNVAVDHDPSECSTTPSSPLSSSSSDEFCSVTTSDHNNTTATDKENLVLLEDDDLSFLEKLWTEPYTMVGEEIYHHQIIINEKFSNNNCNNNHDHFQQSPDSKVKIIPDASSDTTNFDYHIEAMIQNFWSQPYIKDMSHIQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1261g00001 294 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Stsc1261g00001 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Stsc1261g00001 294 MobiDBLite consensus disorder prediction 121 143 - -
Stsc1261g00001 294 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Stsc1261g00001 294 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Stsc1261g00001 294 CDD SANT 71 114 IPR001005 -
Stsc1261g00001 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Stsc1261g00001 294 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Stsc1261g00001 294 FunFam Transcription factor RAX3 9 69 - -
Stsc1261g00001 294 CDD SANT 18 63 IPR001005 -
Stsc1261g00001 294 Gene3D - 70 148 - -
Stsc1261g00001 294 Gene3D - 16 68 - -
Stsc1261g00001 294 PANTHER MYB DOMAIN PROTEIN 55 8 265 - -
Stsc1261g00001 294 SMART sant 68 116 IPR001005 -
Stsc1261g00001 294 SMART sant 15 65 IPR001005 -
Stsc1261g00001 294 MobiDBLite consensus disorder prediction 121 136 - -
Stsc1261g00001 294 MobiDBLite consensus disorder prediction 156 190 - -
Stsc1261g00001 294 MobiDBLite consensus disorder prediction 159 190 - -
Stsc1261g00001 294 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1261g00001 Stsc-Chr1261 2340 3804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1261g00001 1 140 MYB Transcription Factor Family AT1G06180 59.286 9.30e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc1261g00001 Myb_DNA-binding 1.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1261g00001 K09422 - gmx:100777107 257.299