Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc125g00006 ATGAGGCTACCATCGGCACCGCCGTCCTTTTCCCTAACGGTTCTCTGCTGCGGCTGCCACACGCCACTGACCACGTCGATGAACGTGGTGGAGTTCATCTGCCCCTTTTGCCAAATGCCGCAGCGGTTGCCACCAATGCCATCACCACCGCCGCTACTACTACCACCACCACCACCTTCAGTATCGCCGCCACAATCACAATCACCGCTGCCGCCGGCTGGAGCGGCTGCAAAAAAGCGGAAAAACGCCACCGAGACTAGCAAGCTACGCAAGAAGCGTGATGACGGTTCAAGAAAGGTTGAGGTTCCATGCAGTGGTTGCAAAGTGGTTTTTTCCGTTGCAGCTAGTCTCAAGAAGTTCGCTTGCCCTAAGTGTGGTGTTGAGAACCCCGTCGAGCAAGAAGAAATCAATGAGCTAGCGGCTGAGGTTGAACGCGATGAAGATGAGGGTGGAACAGCAGGAGAAACATTTACAGATTATCGGCCAGCAAAAGTATCGATGGGACCTCCGCACCCAGATCCTGTTGTTGAGACTTCTTCCTTGTCTGCAGTGCAGCCACCTGATCCTACTTATGATCCAATACTTAAAGATTATTTGGAAAATTCAAAGACTTTGTCATGCCTGCAGATAGAGACATTGGTCTATGCTTGTCAGAGGCATCTTCTACACCTTCCAGACGGCACAAGGGCGGGATTTTTTATTGGAGATGGAGCTGGTGTTGGTAAGGGCCGGACAGTTGCTGGGCTAATTTGGGAGAACTGGCAGCAAGGAAGGGAAAAGGCATTATGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGAAGAGACTTGGATGATATGGGTGCAACTTGTGTCAAAGTGCATCCTTTGAACAAACTGCCTTATTCTAAGCTTTCTTCGAAGTCTGTTGGAGTCAAGGACGGGGTTATTTTCTTAACCTACAGTAGCCTCATAGCATCCTCTGATAACGGTCAATCTCGTCTCAAACAGCTTGTCCAGTGGTGTGGGCCAAAGTTTGATGGTCTTATAATATTCGATGAGTGTCACAAAGCGAAAAACTTGGTGCCGCCAGCTGAACCTGGTAAGAGGTCAACAAAAAAGTCAACCCAAACTGGCAAAGCAGTGCTTGATATACAGGCTCAACTACCTGAAGCTCGTGTTGTTTATTGTTCTGCCACTGGTGCATCTGAATCTCGCAACATGGCTTATATGGTTCGACTTGGCCTTTGGGGTGATGGAACTTCTTTCGGTGCACTTGATAAAGGGGGTGTTGGAGCTCTAGAACTAGTTGCCATGGACATGAAAGCAAGGGGAATGTATTTATGTTGGACCCTTAGCTACAAGGGTGCTGACTTTGACGTTATTGAAGCACCATTAGAGGATAACATGATGGACATGTATGAAAACGCTGCAAAATTTTGGGCGGAACTGCGTGATGATTTACTGTCCCCAACTTCCGATGGTTTTCTAAATGCCAATCTTGAATCAAATACGCTGTGGTCATTATACTGGGCATGCCACCAGCGTTTCTTTAGACACATGTGTATGTCTGCTAAAGTACCTGCTACTGTGAGACTAGTGAAGCAAGCATTAATGGAAGATAAGTGCGTAGTTATAGGACTGCAGAGTACCGGTGAAGCTAGGACTGAAGGAGCTGTGGCAAAATATGTGGGTATTTGGATTCTGTTGCTTCTCCATGGTTTTGAACTTGATGACTTCATTTCTGGACCTCAAGAGTTACTGGTAAAATTTATAGACGACTGTTTTCCATTGCCAGAGAACCCAGAACTTCTTGAAAAGGATGAATCGCAGGATCTCCAGGGGAAGGGGTGCTCAACAAGTCCTTGTGTATCAGGAAAAGTAAAGGGTAGGAACATAGATAAGGTGCATCCTTCTAGTAATATTGAAAGTGACGAAGAATCTGAAACTGACACTGATGGTGAAATTGATGAATCTGATTATGAACCAGAAGGTGAAGACAGTGCTACCTCTGCTGATGAATCTAGTGACTCTGACTATGCTGAGCTTCAGACATGTGAATTATGCAACCTAGAGGAGGAAAGACAAAATTTGCTTTCATGTTCCGGCTGTGGTAATCTAGTCCATCAAGAATGCTTAAGCCCCCCGATTCTCAAATTAGTTCCAGAAAAATGGTTATGCACTGTGTGCAAAGGAAGCACAAATGACATTCAAGCAGGTCATAGCTACCACCTAACTGAACTCAAGAAGAGGTATGATGCAGCTTTGGAACACAAGACAAAACTGTTGGAGAATATTCGTAAATTAGATCTTCCAATCAATCCCTTGGATGATATTATTGATCAGTTAGGAGGCCCTGAAAAAGTTGCTGAAATTACAGGAAGAAAAGGCAGGCTTGTAAGGGCCCCTTCTGGAAAGGGTGTAATTTACGAGCCTCGTAACAAAAAGGATATCAGTATGGAGATGGTAAACATGCATGAAAAGCGTCTTTTTCTGGATGCTAAGAAGTTAGTTGCTGTTATATCTGAAGCGGGGTCTGCAGGTGTTTCATTGCATGCAGATAGAAGGGTTATTAATCAGAAAAGAAGGGTTCATATAACTTTAGAACTTCCTTGGAGTGCTGACAAAGCAATTCAGCAGTTAGGAAGAACTCATCGATCAAATCAAGCTTCAGCTCCGGAATACAGGGTACTCTTTACTAAGCTTGGTGGTGAACGGAGGTTTGCATCTGCTGTTGCTAAACGATTAGAATCTCTTGGTGCTTTGACCCAGGGGGATCGCAGGGCTGGACCTTCATTAAGTGCTTATAATTATGACAGTGCTTATGGAAAGAGGGCTCTAATGATTATGTACGAAGGAATAATGGAACAGGATTCTTTTCCTATTGTTCCTCCTGGATGTTTGTCTGATAATCCTGACACAATCAATGGCTTTATTATGGAAGCAAAAGCTGCTCTTCTATCTGTTGGAATAGTAAAAGGAGATGAACATTTTGACTACATTAGTGATAAAGATATGCAAGATGTTGGGCGATTCCTCAATCGGCTTCTGGGACTTCCTCCTGATATTCAGAATAGGCTTTTTGAATTATTTGCGAGTATACTTGATCATCTCATTCAGCATGCTCACATTGAAGGTAACCTTGATACAGGCATTGTTGACATGAAAGCTAATGTTGTAGAACTACGAGGCATTCCAAAGACAGTTTACATTGATCCAATGACTGGGGCTTCAACGGTTCTGTTCACTTTCATCTTGGATTGGGGGACCACGTGGCAGTTGGCATTGTCCATGCTGAATGAGAAGCAGAAGGGTTGGCTTGGATCAGCCAATGATGGTTTCTATGAGTCTAGGAGGGAGTGGTTTGGAAGGCGTCATTTCATTTTAGCGTTTGAAAGTTCTGCTTCGAATATGTATAAGACAGTTCGCCCTACTGTTGGGGAATCCCTTCGGGACATGCATTTATTAGAATTGAAAAGGAAATATAAAAAAGTTTCTTCTTTAGAGAATGCTAAAAAAGGATGGGAAGTGGAATATAATGTTTCATCTAAACAGTGTATGCATGGTCCCAAATGTAAGCTTGGCAAGTTCTGTACTGTTGGCCGAAGTAAGCAGGAAGTAAATATCTTGGGTGGTGCTATTCTTCCTCTTTGGCGAGCTATTGGAAAGGCCCTTTCTAAGCAGGATCGCATAAGCCATAGGAGGCTTCGTATTGTTCGCATTGAGACTTCTGCTGATAACCAGCATATAGTTGGGCTTCTTGTTCCTAATGCAGCTGTTAAATCTGTGCTTACAGGTTTGGAATGGGTTCCAGTAGATGATAATTGA 3810 0.4404 MRLPSAPPSFSLTVLCCGCHTPLTTSMNVVEFICPFCQMPQRLPPMPSPPPLLLPPPPPSVSPPQSQSPLPPAGAAAKKRKNATETSKLRKKRDDGSRKVEVPCSGCKVVFSVAASLKKFACPKCGVENPVEQEEINELAAEVERDEDEGGTAGETFTDYRPAKVSMGPPHPDPVVETSSLSAVQPPDPTYDPILKDYLENSKTLSCLQIETLVYACQRHLLHLPDGTRAGFFIGDGAGVGKGRTVAGLIWENWQQGREKALWISVGSDLKFDARRDLDDMGATCVKVHPLNKLPYSKLSSKSVGVKDGVIFLTYSSLIASSDNGQSRLKQLVQWCGPKFDGLIIFDECHKAKNLVPPAEPGKRSTKKSTQTGKAVLDIQAQLPEARVVYCSATGASESRNMAYMVRLGLWGDGTSFGALDKGGVGALELVAMDMKARGMYLCWTLSYKGADFDVIEAPLEDNMMDMYENAAKFWAELRDDLLSPTSDGFLNANLESNTLWSLYWACHQRFFRHMCMSAKVPATVRLVKQALMEDKCVVIGLQSTGEARTEGAVAKYVGIWILLLLHGFELDDFISGPQELLVKFIDDCFPLPENPELLEKDESQDLQGKGCSTSPCVSGKVKGRNIDKVHPSSNIESDEESETDTDGEIDESDYEPEGEDSATSADESSDSDYAELQTCELCNLEEERQNLLSCSGCGNLVHQECLSPPILKLVPEKWLCTVCKGSTNDIQAGHSYHLTELKKRYDAALEHKTKLLENIRKLDLPINPLDDIIDQLGGPEKVAEITGRKGRLVRAPSGKGVIYEPRNKKDISMEMVNMHEKRLFLDAKKLVAVISEAGSAGVSLHADRRVINQKRRVHITLELPWSADKAIQQLGRTHRSNQASAPEYRVLFTKLGGERRFASAVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMIMYEGIMEQDSFPIVPPGCLSDNPDTINGFIMEAKAALLSVGIVKGDEHFDYISDKDMQDVGRFLNRLLGLPPDIQNRLFELFASILDHLIQHAHIEGNLDTGIVDMKANVVELRGIPKTVYIDPMTGASTVLFTFILDWGTTWQLALSMLNEKQKGWLGSANDGFYESRREWFGRRHFILAFESSASNMYKTVRPTVGESLRDMHLLELKRKYKKVSSLENAKKGWEVEYNVSSKQCMHGPKCKLGKFCTVGRSKQEVNILGGAILPLWRAIGKALSKQDRISHRRLRIVRIETSADNQHIVGLLVPNAAVKSVLTGLEWVPVDDN 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc125g00006 1269 ProSitePatterns Zinc finger PHD-type signature. 680 724 IPR019786 -
Stsc125g00006 1269 Coils Coil 129 149 - -
Stsc125g00006 1269 Pfam C-terminal domain on Strawberry notch homologue 768 1048 IPR026937 -
Stsc125g00006 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 825 928 IPR027417 -
Stsc125g00006 1269 MobiDBLite consensus disorder prediction 623 673 - -
Stsc125g00006 1269 FunFam Protein strawberry notch homolog 2 201 407 - -
Stsc125g00006 1269 Pfam P-loop containing NTP hydrolase pore-1 170 469 IPR039187 -
Stsc125g00006 1269 MobiDBLite consensus disorder prediction 639 667 - -
Stsc125g00006 1269 PANTHER STRAWBERRY NOTCH-RELATED 90 1263 IPR026741 GO:0006355
Stsc125g00006 1269 MobiDBLite consensus disorder prediction 81 100 - -
Stsc125g00006 1269 MobiDBLite consensus disorder prediction 624 638 - -
Stsc125g00006 1269 MobiDBLite consensus disorder prediction 142 164 - -
Stsc125g00006 1269 ProSiteProfiles Zinc finger PHD-type profile. 677 727 IPR019787 -
Stsc125g00006 1269 MobiDBLite consensus disorder prediction 48 100 - -
Stsc125g00006 1269 SUPERFAMILY FYVE/PHD zinc finger 667 727 IPR011011 -
Stsc125g00006 1269 MobiDBLite consensus disorder prediction 48 70 - -
Stsc125g00006 1269 Coils Coil 739 759 - -
Stsc125g00006 1269 SMART PHD_3 679 725 IPR001965 -
Stsc125g00006 1269 Pfam PHD-finger 680 725 IPR019787 -
Stsc125g00006 1269 Gene3D - 195 408 IPR027417 -
Stsc125g00006 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 417 IPR027417 -
Stsc125g00006 1269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 749 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc125g00006 Stsc-Chr125 45520 61709 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc125g00006 AAA_34 4e-122 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc125g00006 K26273 - gmx:100808670 1658.27