Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc125559g00001 ATGAAAAAGCTGAAGAAATCTGAAATGCTGAAGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTACTGGCTGAAGTTGCTAGTCATTGCATTGTGAAACTTTATTACTCATTTCAGGATGCTGACTACTTGTATTTAATAATGGAGTACCTGCCTGGGGGTGATGTGATGACACTATTGATGAGGGAAGACACCTTAAGTGAAGATGTTGCCAGATTTTACATTGCACAAAGTGTTCTAGCCATAGAGTCTATTCATAAGCACAATTACATTCACAGAGATATTAAACCAGATAACCTTCTCCTGGATAAAAATGGTCACATGAAGCTCTCAGATTTTGGCCTCTGTAAGCCTCTTGATTGTACTACCCTGTCTACACTGCATGAAAATCAGGCCATGGATGATGAAAATGCGGCAGAGCCCATGGATATTGATGGATGCTTTCCTGATGCGGACAATCGGAGCAGCTGGAGAAGTCCACGTGAACAGCTTCAGCATTGGCAGATGAACAGGAGGAAATTGGCATTTTCAACAGTGGGGACACCTGATTACATTGCTCCTGAAGTACTTTTGAAAAAGGGATATGGAATGGAATGTGACTGGTGGTCATTAGGAGCAATAATGTATGAAATGCTAGTTGGTTACCCTCCATTTTATGCTGATGACCCAATAACTACATGCAGAAAGATTGTTCATTGGAGAAATCATTTACGATTTCCAGAAGATGCACGGTTGACACTTGAAGCCAAAGATTTAATCTGTAGGCTTCTGTGTGATGTTGATCATAGGTTAGGTACTCGAGGGGCACAGGAAATTAAGGT 827 0.416 MKKLKKSEMLKRGQVEHVRAERNLLAEVASHCIVKLYYSFQDADYLYLIMEYLPGGDVMTLLMREDTLSEDVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCTTLSTLHENQAMDDENAAEPMDIDGCFPDADNRSSWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYADDPITTCRKIVHWRNHLRFPEDARLTLEAKDLICRLLCDVDHRLGTRGAQEIKV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc125559g00001 276 SUPERFAMILY Protein kinase-like (PK-like) 1 270 IPR011009 -
Stsc125559g00001 276 FunFam Non-specific serine/threonine protein kinase 176 276 - -
Stsc125559g00001 276 ProSiteProfiles Protein kinase domain profile. 1 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc125559g00001 276 Pfam Protein kinase domain 1 122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc125559g00001 276 Pfam Protein kinase domain 172 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc125559g00001 276 SMART serkin_6 1 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc125559g00001 276 FunFam Non-specific serine/threonine protein kinase 57 124 - -
Stsc125559g00001 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 92 104 IPR008271 GO:0004672|GO:0006468
Stsc125559g00001 276 Gene3D Phosphorylase Kinase; domain 1 1 58 - -
Stsc125559g00001 276 Gene3D Transferase(Phosphotransferase) domain 1 59 276 - -
Stsc125559g00001 276 PIRSF ILK 160 258 - -
Stsc125559g00001 276 PIRSF ILK 1 143 - -
Stsc125559g00001 276 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc125559g00001 Stsc-Chr125559 82 2133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc125559g00001 1 275 AGC Kinase Gene Family AT4G33080 86.232 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Stsc125559g00001 Pkinase 4.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc125559g00001 K08790 - qsa:O6P43_019123 540.421