Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc124g00017 ATGGGTCATCTCATCTCAAACTCAAACTCAAACTCAAACTCAAACTCAAACTCCTTCCATTTCTCCAACAATAACCAAACCTTGTTTTCCTTTTTGTCTTCATCTTTCTTTCTTTTTGTTTCTTCTCTCTCACTAACCAACCATACAAGAACAAGCATGTTTTCAAGGTTGATACATCCTCAAGGCGGCGGCGAAGGACTGGAAGATATGGTGGTGCACGGCGGAGGCGGAGGAGGAGGAGGAGGAGAGCCGTGTCTTGTTTTGACGTCTGATCCGAAGCCTCGTCTTCGTTGGACTACTGACCTCCATGAACGCTTCGTTGATGCTGTCACTCAACTCGGTGGTGCTTCCAAAGCTACGCCGAAAGCGATTATGCGGACAATGAATGTCAAGGGTTTGACTCTATATCACTTAAAGAGTCATTTACAGAAATACAGACTTGGTAAGCAATCTGGAAAAGATTTCGAGGAGGGATGCAAAGATGCTTTGTATCCTCTAGAAAGCCCCGGTACAGATAACACTTCGCCGGCTTGTGATGCAAATGAGGGCCAAGAAGTTAAGGAGGCATTAAGGGCACAGATGGAGGTTCAAAGTAAACTACATTTACTAGTAGAGGCAGAGAAGCACGTGCTAATTCGGCAGGATGCGGAGCAGACATATATAGGCATGCTTGAGAGAGCTTGCAAGATGTTGGCTGATCAAGTTATTAGCAACCCAATGGTAGACACAGATAGCCAAGTGATTGTGATGCCGCAGGGAAGCGAAAGCTGCCTAACATCACTTGAGAATCTGGGTGGATTGACACTAGAAGGATCTCCAAGTGGGGCAAAGAAGAGAATTCTGAATTTAGATTCAGTGGTAGCTCCTTTGATGTGGAATGAAGCTAACATGAGAGCTCAGGGTATCCATTCAAGTCAAGTGAATCCTCATCATGGAATAACTGGGTATGGTATGTAG 957 0.4504 MGHLISNSNSNSNSNSNSFHFSNNNQTLFSFLSSSFFLFVSSLSLTNHTRTSMFSRLIHPQGGGEGLEDMVVHGGGGGGGGGEPCLVLTSDPKPRLRWTTDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDFEEGCKDALYPLESPGTDNTSPACDANEGQEVKEALRAQMEVQSKLHLLVEAEKHVLIRQDAEQTYIGMLERACKMLADQVISNPMVDTDSQVIVMPQGSESCLTSLENLGGLTLEGSPSGAKKRILNLDSVVAPLMWNEANMRAQGIHSSQVNPHHGITGYGM 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc124g00017 318 Gene3D - 92 150 - -
Stsc124g00017 318 NCBIfam myb-like DNA-binding domain, SHAQKYF class 93 148 IPR006447 GO:0003677
Stsc124g00017 318 Pfam Myb-like DNA-binding domain 96 146 IPR001005 -
Stsc124g00017 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 66 246 IPR044848 GO:0003700
Stsc124g00017 318 FunFam Myb family transcription factor 92 150 - -
Stsc124g00017 318 SUPERFAMILY Homeodomain-like 93 149 IPR009057 -
Stsc124g00017 318 Pfam MYB-CC type transfactor, LHEQLE motif 185 230 IPR025756 -
Stsc124g00017 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 150 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc124g00017 Stsc-Chr124 77721 79891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc124g00017 82 237 G2-like Transcription Factor Family AT3G24120 57.229 8.34e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc124g00017 Myb_DNA-binding 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc124g00017 - - adu:107466668 448.358