Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc124g00012 ATGGAAACACCAGAGGAACTCACCTTGGGTTCCAAAGACCATACCAATATTGTCAAAGGCAAGAGGACCAAGCGGATTCGTCCTCAATCTCCTATCCCCTTCTCCATCGCCACCCCCAATTCCGAAGAAGGCGATACTAATCCTAATCCTAATCCTAATTCTAATCATAATCATAATCATAATCCGCCACAATCACAATCACAACTGCAACCAGAAGAACAAAAAGAAGACATTACTTACAATGCCAATGCCAATACCAATAATAACAATACCAGTATGATGACGACGACGACGACAGCAGCAATTGTCAACAATTCCAACAGCATATACATTGAGACCGGGACGCCGACTACTTCTTCGGCAACGGAAGAAGAGGAAGACATGGCGAACTGCCTAATCCTGTTAGCGCAAGGGCAGTCGAGGGAATCACAAGAAGGAGGAGGAGGCACAACAACAAGCTACAACAAGTACAGCAGTAGGAAGTTTCTAGAAGCAGCTGGGGTTGGAGTCGGTTACGGAGGAAGAACAGGAGGAGCAGGAGCAGGAGGAGGAGGATATTATGTATATGAATGCAAAACATGTAACAGAACATTCCCTTCTTTTCAAGCACTTGGTGGCCACAGAGCTAGCCACAAGAAACCCAAGCCTCCTCATCCTGCAATCCCTATTCAAAAACATCAACAACCACCGCCATTGTTGTCCTCCGACGAAGAAGATTTCCAATTCAAGAACACCACCGCCATCAACAATCACAACAAGTCGTCATCGTCAAGCTTCCTCCAGTTAAGCACGAGAGGGAATGCGAGTTTGTATAACAAATCCAAGGTTCACGAATGTTCCATTTGCGGAGCTGAATTCACATCTGGACAAGCCCTCGGTGGCCATATGAGGCGCCACCGTGCTCCGGTGGGGACGGTGACGGCGACTAACACTAACACGACGCTTTCGCTGACGACGACGACGGCGGAGGAGGAGCAACCGAAGAAGAAGAGGAATGTGTTGTCATTGGATTTAGATCTGAATCTTCCTGCACCAGAAGATCACGATCAAAGGGAATCTAAGTTTGGCTTTGGATCCAAGCAACAGCAGCAACCACCGCAACCGCAACCGCAACCTCCGAAGCAGCAACCACAAACAAGTCTTGTCTTCTCTACTACCCCAGCTTTGGTGGATTGTCACTACTGA 1185 0.4776 METPEELTLGSKDHTNIVKGKRTKRIRPQSPIPFSIATPNSEEGDTNPNPNPNSNHNHNHNPPQSQSQLQPEEQKEDITYNANANTNNNNTSMMTTTTTAAIVNNSNSIYIETGTPTTSSATEEEEDMANCLILLAQGQSRESQEGGGGTTTSYNKYSSRKFLEAAGVGVGYGGRTGGAGAGGGGYYVYECKTCNRTFPSFQALGGHRASHKKPKPPHPAIPIQKHQQPPPLLSSDEEDFQFKNTTAINNHNKSSSSSFLQLSTRGNASLYNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTVTATNTNTTLSLTTTTAEEEQPKKKRNVLSLDLDLNLPAPEDHDQRESKFGFGSKQQQQPPQPQPQPPKQQPQTSLVFSTTPALVDCHY 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc124g00012 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 277 299 IPR013087 -
Stsc124g00012 394 MobiDBLite consensus disorder prediction 291 394 - -
Stsc124g00012 394 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Stsc124g00012 394 MobiDBLite consensus disorder prediction 205 233 - -
Stsc124g00012 394 ProSitePatterns Zinc finger C2H2 type domain signature. 279 299 IPR013087 -
Stsc124g00012 394 Pfam C2H2-type zinc finger 188 214 - -
Stsc124g00012 394 Pfam C2H2-type zinc finger 276 302 - -
Stsc124g00012 394 SUPERFAMILY beta-beta-alpha zinc fingers 188 299 IPR036236 -
Stsc124g00012 394 SMART c2h2final6 277 299 IPR013087 -
Stsc124g00012 394 SMART c2h2final6 189 211 IPR013087 -
Stsc124g00012 394 PANTHER ZINC FINGER PROTEIN ZAT5 116 363 - -
Stsc124g00012 394 MobiDBLite consensus disorder prediction 33 75 - -
Stsc124g00012 394 MobiDBLite consensus disorder prediction 304 322 - -
Stsc124g00012 394 MobiDBLite consensus disorder prediction 1 75 - -
Stsc124g00012 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
Stsc124g00012 394 Gene3D Classic Zinc Finger 188 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc124g00012 Stsc-Chr124 53204 54388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc124g00012 1 394 C2H2 Transcription Factor Family AT5G04390 39.573 4.21e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc124g00012 zf-C2H2_6 8.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc124g00012 - - lja:Lj5g3v1698890.1 293.893