Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc124g00008 ATGGGTCGTGAAACCCTCCTTCTTCCTCCACCATCCACCACCACCCCAACAACCACACTCTACGCCCCACCACCCCCGCCGCCACCACCAGCCACACAATCAGCAGTACCATCTGCACCTTCACCTTCTTCTTCTGCTATTGTTGCTGCTACTACTGCCGTGGCTACTGCAGTTGCCGCTCCTCCTACCTCTCTTGCTCCTGGTTTCAGGTTCCACCCCACTGATGAGGAGCTCGTTATCTATTACCTCAAGCGCAAGGTTTCTGGCAAAACCTTCCGATTTGATGCAATTTCCGAGGTTGACATCTACAGAAGCGAACCCTGGGACCTTGCAGATAAGTCGAGGTTGAAGACTAGGGACCAAGAATGGTACTTCTTTAGTGCCCTGGACAAGAAGTATGGCAATGGTGGGAGGATGAACAGGGCTACAAGCAAAGGGTACTGGAAAGCCACCGGGAATGATCGTCCGGTTAAGCACGAACAAAGGACCGTGGGGTTGAAGAAAACTCTGGTTTTCCATAGTGGAAGAGCCCCGGATGGTAAGAGGACTAATTGGGTCATGCATGAGTACCGACTCGTCGACGAAGAGCTGGAGAGGGCTAGGTCTGGATCCTCTCAGCCTCAGGATGCATATGTTTTGTGTAGAGTTTTTCACAAAAATAACATAGGACCTCCAAATGGGCAACGTTATGCACCTTTTGTTGAAGAGGAGTGGGATGATGCATCGGGATTGGTTCCTGGGGCAGAACCTGCGGAGGATGTTACTGTTACTGTTGCCCATCCTCTACGCATTGAAGGCAACGGTCGCACTTCATACAACAGGAGAAATAATGTTGCACAGGATACTCAATCTAACAACAAAGCTCCATTTGATGTGAACAAGCTTCCTATTGAGACTCAAAGTCTGCTAGCTGTCTGCAAAAGGGAGAGTATGGCGGAGTTTCCATCTCCCGAAAAGGAGGATAACTCAAAGCGTCGAATCGATGAGTATCCTTCGCTGCAAACAGAAAATACCAAGCCTATCTCCCAAATATACAAGAGGAGAAGGCATTATTTGAATGTGAACCACTCAAACGGAGATTCAGTTCAAACCAACCAAGAACCGCCATGCTCATCAACAATAACCACTGCCGCGACTGCACTCCCGATGGCAACCACCCCAGCCAACACCACCATCACCAACACCAATGTTGCACCTAAGAAGCATTTCTTGTCTGCACTGGTGGAGTTTTCCTTGATGGAATCCCTTGAATCAAAGGGGAATCCATCCGTTCAACCACCAGAGTTTGATGATGCTTCCTTGGAGGCATCCGTGCCGCCAAATTGCGTTAAGTTCATCAAACACATGCAGAGCGAGATTTACAAGCTTTCGGAGGAGAGGGAGACTATGAGGTTCGAGATGATGAGCGCACAAGCGATGATTAACATGCTCGAGTCGCGCATTGAGCATTTGAGCAAAGAGAATGAGGAACTGAAGAGCATGATGAGCAACAATCCTTAG 1500 0.49 MGRETLLLPPPSTTTPTTTLYAPPPPPPPPATQSAVPSAPSPSSSAIVAATTAVATAVAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKTFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVKHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERARSGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWDDASGLVPGAEPAEDVTVTVAHPLRIEGNGRTSYNRRNNVAQDTQSNNKAPFDVNKLPIETQSLLAVCKRESMAEFPSPEKEDNSKRRIDEYPSLQTENTKPISQIYKRRRHYLNVNHSNGDSVQTNQEPPCSSTITTAATALPMATTPANTTITNTNVAPKKHFLSALVEFSLMESLESKGNPSVQPPEFDDASLEASVPPNCVKFIKHMQSEIYKLSEERETMRFEMMSAQAMINMLESRIEHLSKENEELKSMMSNNP 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc124g00008 499 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 64 342 - -
Stsc124g00008 499 FunFam Nac domain-containing protein 86 74 222 - -
Stsc124g00008 499 Pfam No apical meristem (NAM) protein 67 192 IPR003441 GO:0003677|GO:0006355
Stsc124g00008 499 Gene3D NAC domain 74 222 IPR036093 GO:0003677|GO:0006355
Stsc124g00008 499 MobiDBLite consensus disorder prediction 1 43 - -
Stsc124g00008 499 MobiDBLite consensus disorder prediction 16 36 - -
Stsc124g00008 499 ProSiteProfiles NAC domain profile. 65 219 IPR003441 GO:0003677|GO:0006355
Stsc124g00008 499 Coils Coil 467 494 - -
Stsc124g00008 499 SUPERFAMILY NAC domain 55 220 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc124g00008 Stsc-Chr124 27292 32690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc124g00008 407 492 NAC Transcription Factor Family AT3G10480 41.111 1.79e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc124g00008 NAM 3.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc124g00008 - - adu:107466647 806.594