Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc124g00007 ATGAGTCGAACACTCGGTCCTGGTTTCCGGTTCCACCCTACGGACGACGAGCTAGTTCAATACTATCTCCGCCGGAAGCTCATCGGAAAACTCAACCACCACGACCACATCGCCGTCGTCAATATCTACAACTATGAGCCATGGCAACTCCCCGAATTGTCGAAGCTGAATACCAGGGATTTGGAGTGGTATTTCTTCACTGTGCTGGACAAGAAGTATGAGAAGGGGGAGAAGACAAAACGCGCCACCGTCAACGGTTACTGGAAGACCACCGGCAAGGATCGCGAAATCAAGTATGGCGATCGCCACGTCGGCATGAAGAAGACCCTCGTTTACCATGAAGGACGGGCTCCAACTGGCAAGAGATCAAATTGGGTTATGCACGAGTACCGGATGGTCGATGAGAAATTGGCTGAAGCTGGATATCAGCTGGACGCTTATGTGCTGTGTAGAATTTTTGAGAAGAGCGGGATGGGCCCTAAGAATGGAGAGAAGTATGGTGCTCCCTTTAGAGAGGAGGAGTGGTTAGATGATGATGACCTGCTTGAGCCGAAAGCTGACGAACCTGTGGTTGAGCTGTCTGTTGACCAAAGTGATGCTTTCCTTGAAACTGATGACCTTGAGAAGAATCTTGATACGCATGTGGTGGATGGAAGTGCTGATTTACCAGCAAACGCTCCGAACTTCTTTTATGGGGAGTGTAGTCACTATCCTCAGCGTAAACGAGAATTCGTTGAAGTTCCGAAACCTTTGGAAGATGAATTCATGGATTCCATTGTTGATCCTCTGATTGATGCTGAATCATTCCTGGAAACGGATGATCTTCTGAACCCAATTGAGGGAAATTCCTTTGGTGCAGATCCTTACACGGTTGAGGGAAATCAACCTGGGGCTGATCCTAACACAGCTGAGGGGAATCTTCCTGGGCTAGATCCCAACACAGCTGAGGGAAATTCTACTGGGACAGATTTGTATGCTGTGGATATGTTAGATGAGTATCTTGCACTTTCAGATGATGATATTCTGAAGTATATATCTTTTGATGATTCAGAGCAGATGCCACCTCTTATCCAGCAGGAACAGGTCGAGGATGTTTCTGAGAAACAACAGAAGGTGGAGGGAGAAGCCACATATATTTTCAAGACAAACAAACATGACCTTGAAGCAGATTCTAGCCGTGGAGGAGCTGCTTCAGATGCAAATCCAATTGCAAAACGCTTCAAGAAATGGTTGGATGACATCCCAGCTCCTCCTGCATTTGCTGCAGAGCTTCCATCCAAGAAGGATGCACTTCGGCTTCATTCTGCGCCTCAGTCTTCAAACACCACTCATTTAACTGCTGGCATGGTCAGCATTACAAACATTACTGGAAGAGGCAATGGCATGAATCCAATTTTAGCAAAGATTGGAGGGTTCAACCATCTGATTACCTCTGCTGTTTTTCTGGTACCTGTTTCTGGCTTACTTTGTGGTAAGACTATGTTTGTGCTGATATATGGATGGGCTTCTCTGATGACCTTCTCATTTCTGTTCGTTACGGTGACTAGCAAGATTGGAACCTTCATGTATTCCGGAAAATGA 1581 0.4643 MSRTLGPGFRFHPTDDELVQYYLRRKLIGKLNHHDHIAVVNIYNYEPWQLPELSKLNTRDLEWYFFTVLDKKYEKGEKTKRATVNGYWKTTGKDREIKYGDRHVGMKKTLVYHEGRAPTGKRSNWVMHEYRMVDEKLAEAGYQLDAYVLCRIFEKSGMGPKNGEKYGAPFREEEWLDDDDLLEPKADEPVVELSVDQSDAFLETDDLEKNLDTHVVDGSADLPANAPNFFYGECSHYPQRKREFVEVPKPLEDEFMDSIVDPLIDAESFLETDDLLNPIEGNSFGADPYTVEGNQPGADPNTAEGNLPGLDPNTAEGNSTGTDLYAVDMLDEYLALSDDDILKYISFDDSEQMPPLIQQEQVEDVSEKQQKVEGEATYIFKTNKHDLEADSSRGGAASDANPIAKRFKKWLDDIPAPPAFAAELPSKKDALRLHSAPQSSNTTHLTAGMVSITNITGRGNGMNPILAKIGGFNHLITSAVFLVPVSGLLCGKTMFVLIYGWASLMTFSFLFVTVTSKIGTFMYSGK 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc124g00007 526 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Stsc124g00007 526 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Stsc124g00007 526 MobiDBLite consensus disorder prediction 291 311 - -
Stsc124g00007 526 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Stsc124g00007 526 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 199 - -
Stsc124g00007 526 SUPERFAMILY NAC domain 4 155 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc124g00007 Stsc-Chr124 23121 26580 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc124g00007 4 516 NAC Transcription Factor Family AT5G04410 37.805 1.00e-102 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc124g00007 NAM 8.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc124g00007 - - adu:107466644 895.575