Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc124893g00001 ATGGCGGAGCGTCCTTCCTACGGATTGGGTCCCCGATTGGATTTTCAACAACTACAATTTGAAGCCCAGCATCGATGGTTGAGACCTGCAGAAATTTGTGAAATTCTTCGGAATTATCGGATGTTTCAAATCACATCGGAACCTCATAACAGGCCACCAAGTGGTTCACTATTTCTATTTGATCGAAAGGTTTTGAGATACTTCAGAAAGGATGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGACGTGTTGCACTGCTACTATGCCCATGGTGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGACGCACATAGTATTTGTACATTATTTGGAAGTTAAGGGTAACAAGACAAATACTGGAGGAAATACAGATAGTTATGATGTATCGTCTGATTCCCAAAGGATCACTTCTCCATCGTCTGGCTTACCAACAAATTATAGCAATGTGCCTTCACTGAGTACAGATTC 536 0.4067 MAERPSYGLGPRLDFQQLQFEAQHRWLRPAEICEILRNYRMFQITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMTHIVFVHYLEVKGNKTNTGGNTDSYDVSSDSQRITSPSSGLPTNYSNVPSLSTDS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc124893g00001 179 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Stsc124893g00001 179 SMART CG_1_2 18 136 IPR005559 GO:0003677
Stsc124893g00001 179 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 167 - -
Stsc124893g00001 179 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Stsc124893g00001 179 MobiDBLite consensus disorder prediction 140 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc124893g00001 Stsc-Chr124893 1 2898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc124893g00001 1 149 CAMTA Transcription Factor Family AT5G64220 79.866 1.99e-84 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc124893g00001 K21596 - qsa:O6P43_012338 323.939