Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc124659g00001 ATGATGAGCATCAACGATCATTTGCAACCCCAAGAAGTTCCAATTACTAATAATATGGTACCAAACTATGTTTCAAGCCACCTCAATAATATTCAAACCCCTCAAACTCAAGCCTCTCTCTCTAAGCCTCCAATATCCTCAAACTTGAGCAACCGGAAGCCCTTCTTGAAGAACATATCAATCCCTTCAACAAGAGCACCTCTCACAACCTTCACACAACACAATGAAACAACGACAACCGTTAACTGCAGCAATAATCAAAGTTTCTCTGAAAATTGTGATCTCAAAGACGACAAGCATTACAGAGGCGTTAGGAGACGGCCATGGGGGAAATTCGCAGCCGAGATTCGCGACCCGAATAGGAAAGGATCGAGGGTGTGGCTGGGAACATTTGACACAGCCATAGAAGCTGCTAGAGCATACGATAGAGCTGCTTTCAAGATGAGAGGAAGCAAAGCTATACTGAACTTCCCTCTTGAAGTTGGAGAATACTCTGAAGAATGTTCAGTTTCTTGCTCAACAATGAAGGTTGGGGAGAAGAGGAGAAGAGAGAATGATGAAGAAGGTAGTGAAAATGTTGTTGAGAGTAACAATAAGAAGCAGGTGAAGAAAGAAGAGTGCTTCACTGCATGTCCTTTAACACCATCTTGTTGGAAAGGGTTTTGGGACACTGAAGTTCCTGGAACAATCTTTAGTGTTCCTCCTTTGTCACCCTTATCTCCTCTCATGGTTGTTTGA 738 0.4295 MMSINDHLQPQEVPITNNMVPNYVSSHLNNIQTPQTQASLSKPPISSNLSNRKPFLKNISIPSTRAPLTTFTQHNETTTTVNCSNNQSFSENCDLKDDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAARAYDRAAFKMRGSKAILNFPLEVGEYSEECSVSCSTMKVGEKRRRENDEEGSENVVESNNKKQVKKEECFTACPLTPSCWKGFWDTEVPGTIFSVPPLSPLSPLMVV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc124659g00001 245 FunFam Ethylene-responsive transcription factor 2 99 160 - -
Stsc124659g00001 245 SMART rav1_2 100 164 IPR001471 GO:0003700|GO:0006355
Stsc124659g00001 245 PANTHER DNA-BINDING DOMAIN 60 198 IPR044808 GO:0003700|GO:0009873
Stsc124659g00001 245 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Stsc124659g00001 245 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Stsc124659g00001 245 CDD AP2 99 158 IPR001471 GO:0003700|GO:0006355
Stsc124659g00001 245 Pfam AP2 domain 100 150 IPR001471 GO:0003700|GO:0006355
Stsc124659g00001 245 SUPERFAMILY DNA-binding domain 100 160 IPR016177 GO:0003677
Stsc124659g00001 245 ProSiteProfiles AP2/ERF domain profile. 100 158 IPR001471 GO:0003700|GO:0006355
Stsc124659g00001 245 Gene3D AP2/ERF domain 99 161 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc124659g00001 Stsc-Chr124659 2325 3355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc124659g00001 22 238 AP2-EREBP Transcription Factor Family AT5G51190 48.430 5.36e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc124659g00001 AP2 1.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc124659g00001 K09286 - gmx:100795866 244.973