Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc124390g00001 ATGACAAAGACGCAAACACCCATGGCTGAGCAGCAACAACAAAATAATATACTGTCCGGCCAAAAAGATCTAGCTCACAAAACTCTCCTTCACAGCGAAGCACTCTACCAGTATATACTTGAAACAAATGTGTATCCAACAGAACACGAGAGCTTGAAGGAGCTCCGTGAGATGACAGAAAAGCACCCTCGTAACATCATGGCAACGCCACCGGACGAAGGACAACTTATAAATATGCTGGTTAAACTGATAAACGCAAAGAACACCATGGAAATTAGTGTCTACACTGGTTACTCTTTGCTCTCTACTGCCCTTGCTCTTCCTCATGATGGAAAGATCTTGGCTATGGATGTGAACCGGGAATACTATGAATTTGGGCTGCCCATAATTGAAAAAGCTGGAGTGGCTCACAAGATTGATTTTAGAGAAGGGCCTGCTCTTTCTTTTCTTGATGAACTGCTTAAAGATGTGCGTGCACACTATTATATATTATATCCATCTCAAAATATTTATCAAAGTTAA 522 0.4119 MTKTQTPMAEQQQQNNILSGQKDLAHKTLLHSEALYQYILETNVYPTEHESLKELREMTEKHPRNIMATPPDEGQLINMLVKLINAKNTMEISVYTGYSLLSTALALPHDGKILAMDVNREYYEFGLPIIEKAGVAHKIDFREGPALSFLDELLKDVRAHYYILYPSQNIYQS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc124390g00001 173 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 32 156 IPR029063 -
Stsc124390g00001 173 Pfam O-methyltransferase 42 158 IPR002935 GO:0008171
Stsc124390g00001 173 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 28 173 IPR002935 GO:0008171
Stsc124390g00001 173 PANTHER O-METHYLTRANSFERASE-RELATED 25 155 - -
Stsc124390g00001 173 Gene3D Vaccinia Virus protein VP39 17 162 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc124390g00001 Stsc-Chr124390 1157 2880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc124390g00001 9 160 Monolignol Biosynthesis Gene Families AT4G34050 71.711 1.29e-73 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc124390g00001 K00588 - gmx:100795858 244.588