Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1242g00002 ATGGCTTCTATTCTCATTAACTCCCCCTTCTTCACCCTCTTCCTTTTCTTCTACTTCCTCTCTTCTCTTACCATCATAAATACACTCTCAACTGTTTCCATCTCAGAGACTTCCAACCAAACATTCATTTGTGCCTTACAAGTACAAGGACAAGGACAATCTAACCTTAACTGCACCAGCTTTCCACCTGGAATCTCTCTTCAACTGAATCCCAACAACCTCTCATATTCTGAGATTGTTGGTGGCAGTGGATTCCTATGTGCATTGAGGCCACCATCTTCTTCTAACTCCATCATGGGCTGTTGGAGATTCCCTGCCAATGCTTCCAATGTTCCTTTCAAGCGTATCTACCATGGACCTGTCATTCAAAACATGGATGCTGGAAACTCTCATGTTTGTGGCCTTGTAACTGACAACAATAACAGCCTTAGGTGCTGGCAATGGCCTCACTTTGATTCAAGCAAGCTCACCAACTTGTCAAGTATTGCTGTGGGACGGGATTTCGTCTGCGGCTTATCGGAGTCATCCCGCAAGGTTACTTGCATTGGAAGTGATACCGGAGTGGTTGGCCGGGAGCCCGGTGGCGCGCACTCTGCCATTGCAGCCGGGTTTAGCCATGCTTGTGCCATTTCTCTAGATGGAAACTTGGATTGCTGGGGTGATATTGCTTCAATGGATCAGAAACCGCAGGGTAAGTTTCTTGATTTGGCCTTGGGAGAGAACAGAACTTGTGCACTAAGAATTAATAAAACAGTTGCTTGTTGGGGATCAAATAATTTCAGGACTCCACAGAGATTTGAAAGGACTCCCTTTGAGGCAATTGTGGCAAAGAGAAGTGTTTTCTGTGGGATTGTGAGTTATAATTTTAGTTTGGTATGTTGGGGTGCTTCTGTTTTTGAGACAAATTCTGAGGTGTTTGAGAATGTCCTACCAGGACCTTGTAGGAGTAACTGCCCATGTGGAATCTTAACAGATTCTGCCACACTATGCTCTTCAGGAATGTCAATTTGCACACCTTGCTCCCCAAGAAATGATCCTGATTCGCCATTGCCATTGCCGCCACCCACAAATCCTCCAACCGGAGCTACAAATAGTAGTCGTTGGAGCAAGAAGATGGTGGCATTCTTGGTGGTTGGATGTGTTGGTTGCACTTCCTTGCTGCTAGTTTTTTGTTTCTTCATTTACTGGCATTGCAAAGGTAAAGGAGGCCGCGTCCATGACTCCGGCCGATTGGATGAATCAGGGACGGAGAGTGCCTCGCCGAGCCCCCCGGAAGGTGGAGCCAGCCGTGGAATTCTAGAGAAGCGTTTGAGCCATGTGATAAGCATGGGAAATGGGAGCCATTTAGAGGAATACACTCTTCAAGTGCTTCTTGAAGCCACCAACAATTTCTCAGAGGACAAGAAAATAGGAACAGGTAGCTTTGGGTCAGTATACCATGCTACACTCCAAGATGGCAAGGAAGTCGCCATAAAAAGAGCCGAAAACTCGCCCCTTTCACCGTCGAATGCCCTCTTGGGTGCCACCAGAAGGCAGGAAGACAAGGACAGTGCATTCGTGAACGAGCTAGAGAATCTCTCTAGGCTCCACCACAAGAATCTAGTGAGGCTAATTGGGTTCTATGAGGACTCAAACGAACGGATATTGGTTTATGAGTACATGAATAATGGAAGCTTAAATGAGCATCTCCACAAGATTCAGAGTTCAGCACTCATGTCTTGGGCTGTGAGGATCAAAGTAGCACTTGATGCAGCAAGAGGCATAGAGTACCTTCACCAATACGCAACCCCACCAATCATTCACCGTGACATAAAGTCATCAAATATCTTGTTAGATTCCAAGTGGACAGCAAAAGTTTCTGATTTTGGACTCTCACTGATGGGTCCTGAAGACGAAGAGTCGCATCTTTCGCTCCTCGCGGCCGGCACGGTTGGTTACATGGACCCTGAATACTACAGGCTTCAAATGCTAACAACAAAGAGTGATGTGTATAGTTTCGGAGTTGTGCTGTTAGAACTTCTGTCTGGCCATAAGGCCATACATAAGAATGAGAATGGTGTCCCAAGAAACGTGGTGGATTTTGTGGTGCCATACATTAATCAAGATGAGATTCACAGGGTGTTGGACCGGAGAATGCCGCAGCCGACGCCGTTCGAGATAGAGGCGGTGGCCTATGTTGGTTATTTAGCAGCAGATTGTGTGAGGCTGGAGGGCAGAGATAGACCAACCATGACTGAAGTTGCAAATTACTTGGAAAAAGCATTGGCTGTGTGTTTGGCAAAACCATCCATGTCAAGATCCACCACTAACACTTCTTCTGAATGA 2325 0.4641 MASILINSPFFTLFLFFYFLSSLTIINTLSTVSISETSNQTFICALQVQGQGQSNLNCTSFPPGISLQLNPNNLSYSEIVGGSGFLCALRPPSSSNSIMGCWRFPANASNVPFKRIYHGPVIQNMDAGNSHVCGLVTDNNNSLRCWQWPHFDSSKLTNLSSIAVGRDFVCGLSESSRKVTCIGSDTGVVGREPGGAHSAIAAGFSHACAISLDGNLDCWGDIASMDQKPQGKFLDLALGENRTCALRINKTVACWGSNNFRTPQRFERTPFEAIVAKRSVFCGIVSYNFSLVCWGASVFETNSEVFENVLPGPCRSNCPCGILTDSATLCSSGMSICTPCSPRNDPDSPLPLPPPTNPPTGATNSSRWSKKMVAFLVVGCVGCTSLLLVFCFFIYWHCKGKGGRVHDSGRLDESGTESASPSPPEGGASRGILEKRLSHVISMGNGSHLEEYTLQVLLEATNNFSEDKKIGTGSFGSVYHATLQDGKEVAIKRAENSPLSPSNALLGATRRQEDKDSAFVNELENLSRLHHKNLVRLIGFYEDSNERILVYEYMNNGSLNEHLHKIQSSALMSWAVRIKVALDAARGIEYLHQYATPPIIHRDIKSSNILLDSKWTAKVSDFGLSLMGPEDEESHLSLLAAGTVGYMDPEYYRLQMLTTKSDVYSFGVVLLELLSGHKAIHKNENGVPRNVVDFVVPYINQDEIHRVLDRRMPQPTPFEIEAVAYVGYLAADCVRLEGRDRPTMTEVANYLEKALAVCLAKPSMSRSTTNTSSE 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1242g00002 774 CDD STKc_IRAK 470 753 - -
Stsc1242g00002 774 Gene3D - 35 188 IPR009091 -
Stsc1242g00002 774 Gene3D - 189 336 IPR009091 -
Stsc1242g00002 774 Gene3D Transferase(Phosphotransferase) domain 1 554 765 - -
Stsc1242g00002 774 SMART serkin_6 464 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1242g00002 774 Pfam Regulator of chromosome condensation (RCC1) repeat 199 221 - -
Stsc1242g00002 774 ProSitePatterns Serine/Threonine protein kinases active-site signature. 599 611 IPR008271 GO:0004672|GO:0006468
Stsc1242g00002 774 SUPERFAMILY RCC1/BLIP-II 113 297 IPR009091 -
Stsc1242g00002 774 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 197 763 IPR044815 GO:0004674
Stsc1242g00002 774 MobiDBLite consensus disorder prediction 406 430 - -
Stsc1242g00002 774 Gene3D Phosphorylase Kinase; domain 1 430 553 - -
Stsc1242g00002 774 FunFam Serine/threonine-protein kinase-like protein CCR4 554 771 - -
Stsc1242g00002 774 ProSitePatterns Protein kinases ATP-binding region signature. 470 492 IPR017441 GO:0005524
Stsc1242g00002 774 ProSiteProfiles Protein kinase domain profile. 464 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1242g00002 774 Pfam Protein kinase domain 464 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1242g00002 774 SUPERFAMILY Protein kinase-like (PK-like) 441 752 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1242g00002 Stsc-Chr1242 14339 16663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1242g00002 28 769 Receptor kinase-like Gene Family AT5G47850 51.507 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc1242g00002 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1242g00002 - - pvu:PHAVU_011G003100g 977.237