Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1242g00001 ATGGCCAACACTCCCATCATCCTCTTTCACTTCTTCCAACTGTTGTTACTCACTCCCTACTTCACTTTCCCGCAATGTGCGTCTCAATCCTTGGAAGCCAAGGCTCTCCTTGAGTTCAAGAACCATTTGAATGACCCCTTGAATTGGTTGGGTTCATGGAATGAAACAGTGTCTCCATGTGAGTTTGTTGGAGTGAACTGTGATGCATTCTCAGGGAAGGTCACAGAAATCTCAATGGAGAACAAGTCACTCTCGGGGGTCCTTTTCCCATCAGTCTCAGTTCTTCAGAGCCTGCAAGTGTTGTCACTCCCATCAAACAAGATCTCTGGAAAGCTTCCGCTGGAAATAAGCAGATGCACCAACCTAAGAGTGCTGAATTTGACAGGAAACCTTATGGTTGGAACCATCCCAGACTTATCCATGCTGAGGAACCTTGAGGTTCTTGATCTTTCAGCAAATTACTTCACAGGGAGAATCCCAAGCTGGGTTGGGAACCTAACTGGTCTTGTGTCACTGGGCCTTGGGGTGAATGTGTACACTGAGGGTGAGATTCCAGACACACTTGGAAACCTCAAGAACTTGACTTGGCTCTATCTTGGTGGTTCCCATTTGATAGGAGAGATTCCTGAGTCATTGTATGAACTGAGGGCATTGCAGACACTTGACATTTCAAGGAACAGGATCTCTGGCAAAATCTCAAGATCAATTTCCAAGTTAGAGAATCTGTACAAGCTTGAGCTTTTCATGAATAACTTGACAGGAACAATCCCAGCTGAGTTTGCAAACCTTACCAATCTGCAAGAGGTTGACATTTCTGCAAACCATTTGTATGGTAGTTTACCAGAGGAAATTGGTAATATGAAAAACTTGACTGTCTTTCAAGTATATGGTAACAAATTGTCTGGAGAGCTTCCTGCTGGATTTGGGGATATGCAGAATCTTGTTGGGTTCTCAGTTTATAGAAACAGCTTCACCGGGACAATTCCAGAGAATTTTGGCCGTTTTTCACCGCTTGAGAGTATTGACATATCTGAGAATCAATTCTCAGGTGATTTCCCAAAGTTCTTGTGTGAAGGAAGGAAGTTGGAATTTTTGCTTGCATTGCAAAACAATTTCTCTGGGAACTTTCCAGAGTCTTATGGCTCATGCAAGTCTCTGTTGAGATTAAGGATTAGTGGTAACCAATTATCTGGGAAAATTCCAGATGGTGTTTGGGCACTTCCAGATGTAAAAATAATTGATTTAGCTTACAATGATTTCAGTGGTGAGATATCTTCAGACATTGGGTTTTCTACCAACTTGAGTGAGTTAGTTTTGACACAGAACAAGTTTTCTGGTAAGCTTCCATCAGAACTTGGCAATCTGGTGAACCTTGAGAAGCTTTACTTGATCAATAATACTTTCTCTGGTGAAATACCACCTGAAATAGGATCACTGAAGCAACTATCTACTTTGCATCTGGAACAGAATTCATTGACTGGACCAATACCTGCAGAATTTGGTGGTTGTGCAAGGCTTGTAGACTTGAATCTTGCATGGAATTCTCTATCTGGAAACATCCCCCAGTCAATTTCCCTTATGAGCTCATTGAACTCTCTTAATCTATCTGGAAACAGACTTTCTGGTTCTATTCCGGATAAGTTAGAGACGTTGAAACTGAGCTCTGTAGATTTTTCTCAAAACCTGCTTTCTGGGAGCATCCCATCTGGTCTTCTGATTATTGGAGGGGGGCAGGCTTTTCTTGGGAACAAGGGACTTTGTGTTGAGGAAAATTTTAGACCTCCCATGAGTCCTGATTTGAGAATCTGTGCTGAAAGGCATGGTCAGAAAAGACTTTTTGCTGATAAACTTGCCTTGTTCTGTGTCATTGCTTCTATTTTTGCCATCGCTTTAGCCGTGTTGCTGCTTTTGAATCGTGGAAATCTCAAACATATTTTTGCTGATAAGAACTTGAATGGTCAAGGTGAATCAAGTCAAAAATGGAAACTTGCATCTTTCCACCAAGTAGATATCGATGCCGACGAAATATGCAAATTGAATGATGACAATTTAATTGGAAGTGGCAGTACAGGGAGGGTGTATCGAGTAAAGTTGAGAAAGAATCATGCCACAGTCGCTGTAAAGAAACTAGGCAAAGGTGATAATGTGAAGATTTTAGCAGCAGAGATGGAGATACTGGGGAAAATTAGACATAGGAATATACTTAAGCTCTATGCTTGTTTAGTAAAAGGAGGGTCCAATTTTTTGGTTTTTGAGTACATGCCAAATGGTAATCTTTTTCGTGCTCTACACAGAGAGATTAAAGATGGGAAGAGAGAGTTGGATTGGAACCAGAGGTATAAGATTGCTCTGGGAGCTGCAAAGGGAATTGCCTATTTACACCATGATTGTTCTCCACCTATTATTCACAGGGATATAAAATCCAGCAACATCTTGCTTGATGAGGATTATGAGCCCAAAATAGCTGATTTTGGTTTTGCAAGGTTGGCAGAAAAATCCAGTGATCAGTTGGGTTATAGCAGCTGTGTTGCTGGTACACATGGTTATATTGCACCAGAGCTTGCTTATACACTTGACATCAATGAAAAGAGTGATGTATACAGCTTCGGAGTGGTGCTATTAGAATTGGTTTCAGGAAGAGAACCAATTGAAGAAGATTATGGAGATGCCAAGGACATTGTTTACTGGGTTTTGACTAATCTGAATGACAATGAAAGTGTTGTCAACATCCTTGATAAAAAGTTGGCATCCAAGTCTGTGAAGGAGATGATAAAAGTGTTGAAGATTGCTATAAAGTGTACAACTAAGCTTCCATCACTGCGCCCAACAATGAGAGAGGTTGTAAATGATATTCCCCTTGCGTCTACGAGTTTTTAA 2877 0.4108 MANTPIILFHFFQLLLLTPYFTFPQCASQSLEAKALLEFKNHLNDPLNWLGSWNETVSPCEFVGVNCDAFSGKVTEISMENKSLSGVLFPSVSVLQSLQVLSLPSNKISGKLPLEISRCTNLRVLNLTGNLMVGTIPDLSMLRNLEVLDLSANYFTGRIPSWVGNLTGLVSLGLGVNVYTEGEIPDTLGNLKNLTWLYLGGSHLIGEIPESLYELRALQTLDISRNRISGKISRSISKLENLYKLELFMNNLTGTIPAEFANLTNLQEVDISANHLYGSLPEEIGNMKNLTVFQVYGNKLSGELPAGFGDMQNLVGFSVYRNSFTGTIPENFGRFSPLESIDISENQFSGDFPKFLCEGRKLEFLLALQNNFSGNFPESYGSCKSLLRLRISGNQLSGKIPDGVWALPDVKIIDLAYNDFSGEISSDIGFSTNLSELVLTQNKFSGKLPSELGNLVNLEKLYLINNTFSGEIPPEIGSLKQLSTLHLEQNSLTGPIPAEFGGCARLVDLNLAWNSLSGNIPQSISLMSSLNSLNLSGNRLSGSIPDKLETLKLSSVDFSQNLLSGSIPSGLLIIGGGQAFLGNKGLCVEENFRPPMSPDLRICAERHGQKRLFADKLALFCVIASIFAIALAVLLLLNRGNLKHIFADKNLNGQGESSQKWKLASFHQVDIDADEICKLNDDNLIGSGSTGRVYRVKLRKNHATVAVKKLGKGDNVKILAAEMEILGKIRHRNILKLYACLVKGGSNFLVFEYMPNGNLFRALHREIKDGKRELDWNQRYKIALGAAKGIAYLHHDCSPPIIHRDIKSSNILLDEDYEPKIADFGFARLAEKSSDQLGYSSCVAGTHGYIAPELAYTLDINEKSDVYSFGVVLLELVSGREPIEEDYGDAKDIVYWVLTNLNDNESVVNILDKKLASKSVKEMIKVLKIAIKCTTKLPSLRPTMREVVNDIPLASTSF 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1242g00001 958 Gene3D Ribonuclease Inhibitor 313 596 IPR032675 -
Stsc1242g00001 958 FunFam Receptor-like protein kinase HSL1 289 595 - -
Stsc1242g00001 958 Pfam Protein kinase domain 681 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1242g00001 958 Gene3D Ribonuclease Inhibitor 241 312 IPR032675 -
Stsc1242g00001 958 Gene3D Ribonuclease Inhibitor 179 240 IPR032675 -
Stsc1242g00001 958 SMART LRR_typ_2 527 551 IPR003591 -
Stsc1242g00001 958 SMART LRR_typ_2 455 479 IPR003591 -
Stsc1242g00001 958 SMART LRR_typ_2 95 119 IPR003591 -
Stsc1242g00001 958 SMART LRR_typ_2 215 239 IPR003591 -
Stsc1242g00001 958 SMART LRR_typ_2 142 166 IPR003591 -
Stsc1242g00001 958 SMART LRR_typ_2 263 287 IPR003591 -
Stsc1242g00001 958 Gene3D Transferase(Phosphotransferase) domain 1 758 956 - -
Stsc1242g00001 958 ProSiteProfiles Protein kinase domain profile. 679 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1242g00001 958 Gene3D Phosphorylase Kinase; domain 1 678 757 - -
Stsc1242g00001 958 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 754 957 - -
Stsc1242g00001 958 FunFam Leucine-rich receptor-like protein kinase family protein 669 753 - -
Stsc1242g00001 958 SUPERFAMILY L domain-like 53 306 - -
Stsc1242g00001 958 FunFam Probable inactive receptor kinase RLK902 29 182 - -
Stsc1242g00001 958 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Stsc1242g00001 958 SMART serkin_6 679 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1242g00001 958 Pfam Leucine rich repeat 217 276 IPR001611 GO:0005515
Stsc1242g00001 958 Pfam Leucine rich repeat 481 540 IPR001611 GO:0005515
Stsc1242g00001 958 SUPERFAMILY Protein kinase-like (PK-like) 678 951 IPR011009 -
Stsc1242g00001 958 FunFam LRR receptor-like serine/threonine-protein kinase 213 288 - -
Stsc1242g00001 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672|GO:0006468
Stsc1242g00001 958 Gene3D Ribonuclease Inhibitor 29 178 IPR032675 -
Stsc1242g00001 958 CDD STKc_IRAK 685 948 - -
Stsc1242g00001 958 ProSiteProfiles Leucine-rich repeat profile. 529 552 IPR001611 GO:0005515
Stsc1242g00001 958 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 215 949 - -
Stsc1242g00001 958 ProSitePatterns Protein kinases ATP-binding region signature. 685 709 IPR017441 GO:0005524
Stsc1242g00001 958 SUPERFAMILY RNI-like 245 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1242g00001 Stsc-Chr1242 8432 11816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1242g00001 21 951 Receptor kinase-like Gene Family AT1G72180 55.898 0.0 1011
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc1242g00001 Pkinase 3.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1242g00001 - - gmx:100789704 1410.97