Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123g00011 ATGGCCAACCGCGACCAACCCGTCAACGGAAAAGCCTCAACTCTCTCCCTCTTGAAATCCGGCAACCTTATTCTCATCGACGCCGGAAGAACCACCTTCTGGTCCACCACCACATTCTCCTCTTCCAAAGTCCACCTCAAGCTCAACAACAACGGCAACCTCCTCCTCCAAACTTCTCAAGGAGCCACCCTCTGGCAAAGCTTCGATTCACCAACGGACACCCTTCTTCCCGGTCAAAAACTCACCGATCAAGCTTTCCTTCTCTCTTCAAGAAGCACAACAAACTACTCCTCAGGCTTCTACAAGCTCTTCTTCGACACCGATAACTCCCTCAAGTTGCTTTACAAAGGCCCTAACGTCTCCAGCGTGTACTGGCCAACCCCCTATAACACACCAAGCACTAACGGAAGATCCACCTTCAACATTTCAAGAATCGCACTCTTGGATTCTTTAGGAAGCTTCTTATCCTCCGATGGCTTCCAATTCAACTCCACCGATTACCTCGCAAGACTCCACCGAAGGCTGGTCATGGATCCTGATGGAAACGCCCGCTTATACAGCTTCAACGAGAACCGTAAGATCTGGGAAGTAACTTGGCTTGCCATTTCCGCATCTTGTAGCGTTCATGGCCTCTGCGGAGCAAATAGCTTGTGCGCTTATCATCCTGTTAATGGCAGAACCTGCTATTGCATGCAAGGATTCAAGGTTAAGGATCCCAATGACTGGACTCAAGGTTGCGTCCCTGAGTTTCATGAAGAAAACCTCACTTGCAGTAGCAAGAAAAACGTGTCCGTAGATTACGTCACTCTTCCAACCACGGAGTTTTATGGCTACGAGAGCAGAGTTTACAACGTTGCAAGTTTGATAGAATGCCAGAATATATGCACGCAGCTTTGCGACGATTGCAAAGGCTTTCAACTCAGTTTCAATAGCATAAGAACATATAATTGTTACCCTAAAACAGTTTTGCTTAACGGAAGAGATTCTCCTCCTGATTACAGTGGCGACACGTATTTGAAATTGCCGAAAGAAGCTTTCTTGTCTTCCAAGAAGCCTCTCAAGAATTCACCGATGGAATGTGATTCTAATTTGGCTCAGCCTTTGGATAGATTTTACCAGAAGCCAAGAAGAAACTCAACGTTGTATTTCTTGCTATGGTTTTCCAGCGCGGTAGGGGTGCTTGAATTGACAATAATCTTAGCGGTGTGGTTCTTCTTGTTCAGAACAAATAAGCAACCTGATCATGAAGATCAACGGTTACTCCTTTCCGCTACGGGATTCCAGAGATTCAGCTACGCAGAGCTGAAAAGAGCGACAAAAGGATTCAGCAAAAGCCAAGAGATTGGTCGAGGCGCCGGCGGGGTTGTGTACAAAGGGAAGCTAGACGATGATCGCGTTGCTGCCATAAAATGCCTCAGCAGTAGTGAAGCGAATCAAGGAGAAGCTGAATTCCTAGCAGAGTTAAGCACCATTGGGATGTTGAACCACATGAATTTGATTGACATGTGGGGCTACTGTGTTGAAGGGAAGCACAAGATATTGGTTTATGAGTTCATGGAGCATGGCTCCTTGGCGGATTATGTGTCTTCAAACACGCTTGATTGGAAGAAAAGGTTTGATGTTGCAGTTGGAACAGCGAAAGGGCTTGCTTATTTGCACGAAGAGTGTTTGGAATGGGTGTTGCATTGCGATGTGAAGCCGCAGAATATTCTTCTAGATTCCAACTTCAAACCCAAGGTAGCGGATTTCGGGCTGTCAAAGCTTCTGAATAGAGACGAGCGTGGGAGTTCAGGGTTTTCAAGAATAAGAGGGACGCGTGGGTACATGGCTCCAGAGTGGGTTTACAATCTTCCAATAACTTCCAAGGTGGATGTTTATAGCTATGGGATTGTGGTGCTGGAAATGGTGAGTGGGAAGAGTGCTATGGAGACGCATAGTCTTGATTTGAGTAGTCGGGGAATTGAGCAGCGGCGGTTGGTGACGTGGGTGAGAGAGGTCGTAGAAGGTGCTCCGAATACAGAGTCTTGGGTTGAGGCTGTTGTGGATACTAAATTGGAAGGGAAATATGAGATTTCACAGGTTGAGGCTTTGGTCAAAGTGGCTTTGCAGTGTATTCATGATGACATGAATCAAAGACCCTCCATGAGCCAAGAATGCTTGTTATTTGCATGTGATGGCACGATGATGGTAGTGGTCATGGCCACCATAGTCCGTCAAACATATATGAGTGGGAGTGGGCTCTTTTGA 2247 0.4664 MANRDQPVNGKASTLSLLKSGNLILIDAGRTTFWSTTTFSSSKVHLKLNNNGNLLLQTSQGATLWQSFDSPTDTLLPGQKLTDQAFLLSSRSTTNYSSGFYKLFFDTDNSLKLLYKGPNVSSVYWPTPYNTPSTNGRSTFNISRIALLDSLGSFLSSDGFQFNSTDYLARLHRRLVMDPDGNARLYSFNENRKIWEVTWLAISASCSVHGLCGANSLCAYHPVNGRTCYCMQGFKVKDPNDWTQGCVPEFHEENLTCSSKKNVSVDYVTLPTTEFYGYESRVYNVASLIECQNICTQLCDDCKGFQLSFNSIRTYNCYPKTVLLNGRDSPPDYSGDTYLKLPKEAFLSSKKPLKNSPMECDSNLAQPLDRFYQKPRRNSTLYFLLWFSSAVGVLELTIILAVWFFLFRTNKQPDHEDQRLLLSATGFQRFSYAELKRATKGFSKSQEIGRGAGGVVYKGKLDDDRVAAIKCLSSSEANQGEAEFLAELSTIGMLNHMNLIDMWGYCVEGKHKILVYEFMEHGSLADYVSSNTLDWKKRFDVAVGTAKGLAYLHEECLEWVLHCDVKPQNILLDSNFKPKVADFGLSKLLNRDERGSSGFSRIRGTRGYMAPEWVYNLPITSKVDVYSYGIVVLEMVSGKSAMETHSLDLSSRGIEQRRLVTWVREVVEGAPNTESWVEAVVDTKLEGKYEISQVEALVKVALQCIHDDMNQRPSMSQECLLFACDGTMMVVVMATIVRQTYMSGSGLF 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123g00011 748 PANTHER OS07G0415500 PROTEIN 1 717 - -
Stsc123g00011 748 ProSitePatterns Protein kinases ATP-binding region signature. 448 470 IPR017441 GO:0005524
Stsc123g00011 748 Gene3D - 1 76 IPR036426 -
Stsc123g00011 748 ProSiteProfiles Protein kinase domain profile. 442 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc123g00011 748 SMART serkin_6 442 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc123g00011 748 Pfam S-locus glycoprotein domain 170 237 IPR000858 GO:0048544
Stsc123g00011 748 Gene3D Phosphorylase Kinase; domain 1 406 518 - -
Stsc123g00011 748 SUPERFAMILY Protein kinase-like (PK-like) 418 717 IPR011009 -
Stsc123g00011 748 ProSiteProfiles PAN/Apple domain profile. 257 342 IPR003609 -
Stsc123g00011 748 CDD STKc_IRAK 448 717 - -
Stsc123g00011 748 FunFam S-receptor-like serine/threonine-protein kinase 409 518 - -
Stsc123g00011 748 FunFam Putative receptor-like protein kinase 519 726 - -
Stsc123g00011 748 ProSiteProfiles Bulb-type lectin domain profile. 1 69 IPR001480 -
Stsc123g00011 748 PIRSF SRK 1 741 IPR024171 GO:0004674
Stsc123g00011 748 Pfam Protein kinase domain 442 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc123g00011 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 560 572 IPR008271 GO:0004672|GO:0006468
Stsc123g00011 748 SUPERFAMILY alpha-D-mannose-specific plant lectins 2 89 IPR036426 -
Stsc123g00011 748 Pfam D-mannose binding lectin 2 83 IPR001480 -
Stsc123g00011 748 Gene3D Transferase(Phosphotransferase) domain 1 519 724 - -
Stsc123g00011 748 Gene3D - 77 199 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123g00011 Stsc-Chr123 82489 84910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123g00011 405 726 Receptor kinase-like Gene Family AT1G60800 36.086 6.31e-63 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc123g00011 Pkinase 2.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc123g00011 - - aip:107606391 1287.32