Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123g00008 ATGGCTCCCTACCATCTCCAACCTCAAGACGCTCTATACTGCTCAGAGGAAGAAGATCAATTAGGACAAGATGACTGTAATAATAATATGCTGCTCCTCCCACACGGGGACTTGTTTTGGGATGATGAGGAGCTTGCGTGGCTGCTTGCCAGAGAGCAACACAACCCTCTCTGCCTTCAGCTAGAATGTGCTCGCAGAGAAGCAGTTGAATGGATCCTGAAAGTGAGCTCACACTACTCCTTCTCTGCTCTCACTTCTCTTCTTGCCGCCAACTATCTTGACAGGTTCCTCTTCACATTCTCCTCCTCCTCCTCCAACAATAAGCCATGGATGACTCAGCTTGCTGCCGTGGCTTGTCTCTCCCTTGCTGCCAAGGTCGAAGAGACTCACCTTCCTCACTTACTAGACCTCCAGGTGGAGGATTGCAGATACGTGTTCGAAGCAAAAACAATTAAGAGGATGGAGATGTTGGTGCTTTCAACTCTAAGATGGAAGATGAATCCCGTCACTCCTCTCTCTTTTCTTGACTATATCACAAGAAGACTTGGATTATTATTTTCTTCAGACTTCCTCGCCAGATCCCAAGCACTTCTTCTATCTACCCTTCCAGATTCGAGGTTCATGAGTTACCTTCCTTCTGTCTTGGCAACTGCCACAATGATGCATGTTATGAATAGCGTTGAATACAAGAACGAGGTGATACGCATTCTTGGAACGAAGGAGGAGAAGGTGGATGAATGCTTGAAGGTGATATGGGAATGGGAACAGGGGAAGAAACGCAAGTTTGGATGGGTTCCTGGGAGTCCAAACGGCGTCATTGATGTGTCGTTTAGCTCTGCCTCTGATGATAGCTCCAATGATTCATGGGCTCTGCTTCCTAATAATAACAATAACAATCCTTCATCTTCTTCTTCTTCAGTCTCATCCTCACCGGAACCACAACCACCTTTGCCTAAGAAGACTAGGACTCTGCTAAACTCCTCATCAGATTTCATTTAA 999 0.4625 MAPYHLQPQDALYCSEEEDQLGQDDCNNNMLLLPHGDLFWDDEELAWLLAREQHNPLCLQLECARREAVEWILKVSSHYSFSALTSLLAANYLDRFLFTFSSSSSNNKPWMTQLAAVACLSLAAKVEETHLPHLLDLQVEDCRYVFEAKTIKRMEMLVLSTLRWKMNPVTPLSFLDYITRRLGLLFSSDFLARSQALLLSTLPDSRFMSYLPSVLATATMMHVMNSVEYKNEVIRILGTKEEKVDECLKVIWEWEQGKKRKFGWVPGSPNGVIDVSFSSASDDSSNDSWALLPNNNNNNPSSSSSSVSSSPEPQPPLPKKTRTLLNSSSDFI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123g00008 332 CDD CYCLIN_AtCycD-like_rpt1 64 164 - -
Stsc123g00008 332 SMART cyclin_7 70 160 IPR013763 -
Stsc123g00008 332 SMART cyclin_7 173 253 IPR013763 -
Stsc123g00008 332 Pfam Cyclin, C-terminal domain 169 253 IPR004367 -
Stsc123g00008 332 FunFam D6-type cyclin 55 167 - -
Stsc123g00008 332 PANTHER CYCLINS 59 251 IPR039361 -
Stsc123g00008 332 MobiDBLite consensus disorder prediction 281 332 - -
Stsc123g00008 332 Gene3D - 64 167 - -
Stsc123g00008 332 SMART Cyclin_C_2 169 281 IPR004367 -
Stsc123g00008 332 MobiDBLite consensus disorder prediction 281 310 - -
Stsc123g00008 332 SUPERFAMILY Cyclin-like 39 167 IPR036915 -
Stsc123g00008 332 Pfam Cyclin, N-terminal domain 63 167 IPR006671 -
Stsc123g00008 332 Gene3D - 168 249 - -
Stsc123g00008 332 CDD CYCLIN_AtCycD-like_rpt2 169 251 - -
Stsc123g00008 332 SUPERFAMILY Cyclin-like 152 256 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123g00008 Stsc-Chr123 57136 58482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123g00008 10 289 Core Cell Cycle Gene Families AT5G67260 44.373 7.14e-79 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc123g00008 K14505 - aprc:113874132 326.635