Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123g00006 ATGCGCAATATAACCTTGCTTCTCTTACTGTTATTACTGTTCTTCTTGTGTTGGAATCATGCATCTTCTTTGGCGCCTGAAGATGCCATCTCACTCATGGCATTCAAGTCCAAAGCCGATCCCAACAACCATCTCAACTTCACCAACACCACCGCCGCCGCACTCCACCGCTTCTGCCACTGGCAAGGCGTCCAATGCGCCGCAAACAGAGTGGTCCGCCTTGTCATCCAGGACATGGATCTCGGCGGCGTCTTCGCTCCGGACACACTGTCCAAGCTCGACCAGCTCCGCGTGCTCAGCCTCCATAACAACTCCCTCACCGGAGCCATACCGGACCTCTCCGGCCTCACAAACCTCAAGAGCCTCTTCCTCCACAACAACCGCTTCAACGATTCTCTCCCTCCTTCACTTTTCTCCCTCCACAGGCTCCGAACGTTGGATTTCTCCCACAACAACCTCTCCGGTCACATTCCAACCGCCTTCACCAAACTCGACCGCCTCTACTCCCTCCGCTTGAGTTGGAACCGCTTCAACGGTACCGTTCCTCCTTTCAACCAGTCTTCTCTCAAAACGTTTGATGTCTCCGGCAACAACCTCACCGGCCCCGTTCCCCTCACACCTACATTGTTCCGTTTTGATGCTTCCTCTTTCTCTTCCAACCCGGGACTCTGCGGTGAAATCATCCGCAAAGAATGCCATCCCAGTGCGCCATTTTTCGGTCCCATACCGGCGTCGTCACCTCCACCGGCTGTGATTCTCGGCCAGAGCGCGAAGGTTCACGGCATGAATGGCATTTTCCGGCAGCCGTACGAGAAGAAACGAGACAGGACGGCGGTGATCGTGGGATTCTCAGCGGGATTGGTTATCCTCGTGGTATCGTTGGTGTGCTTCGCGGTGACCTTGAGGAGGCAGAGGAGGAACAGCGTGGGAGGAGAGAGCAAGAAGGAAGTAGCAATGAGGTCAGGATACATGGGATCCGATGCGGCGGCGACGGCGGAGGCAGCGGCAGCGGCGGCAATGCAGGTGGAGCAAGAAAGAGAGCTGGAGGAGAAGGTACGAAGGGCAGAGGTAGTGGCGAAGAGTGGGAGCTTAGTATTCTGTGCGGGTGAGGCGCAGGTGTATACGCTGGAGCAGCTGATGAAGGGCTCTGCGGAGCTTTTAGGGAGAGGGTGTTTGGGGACTACTTATAAGGCGGTTCTTGATAACCGTCTGATCGTTACGGTTAAGAGGCTTGATGCTGGGAAGATGGCTTCACATGCAACAAAGGAGGTTTTCGAGCGACACATGGAATCAGTTGGTGGTCTTCGCCATCCTAATTTGGTTCCGGTTAGGGCTTATTTTCAGGCCAAGGATGAGAGGCTTGTTATCTACGATTACCAACCCAATGGCAGCCTCTTCTCCCTCATTCACGGTTCTAGATCAAGCAGAGCAAGGCCACTGCACTGGACATCGTGCTTAAAAATAGCAGAAGACGTAGCACAGGGTTTGTCCTACATCCACCAAGCATGGAGATTGGTCCACGGCAATCTCAAATCTTCCAATGTCCTCCTTGGCCCTGATTTCGAGGCATGCATCACGGACTATTGCCTCACCCTTCTGGCCAACCCATCAAGCTTCCATGAAGATGCTGAATCCGCAGCCTACAGGGCTCCAGAGACTCGCAATCCCAAGCACCAGCCAACACCCAAATCAGACGTTTATTCATATGGGGTTCTGCTGATGGAGCTTCTCACAGGGAAATCTCCCTCCGAGATACCATTCTTGGTTCCCAGCGATATGTTGAGCTGGGTGAGGTCCATTAGGGATGACAATGGTGGTGATGATAGTAGAATGGACATGCTTCTTCAGGTGGCTACCACTTGTAGCTTGACATCGCCGGAGCAGAGGCCCACCATGTGGCAAGTGTTGAAGATGTTGCAGGAGATCAAGGAGATTGTATTATTGGAGAATAATAATACTGAATCCGACTTGCGTCAGTAG 1980 0.5328 MRNITLLLLLLLLFFLCWNHASSLAPEDAISLMAFKSKADPNNHLNFTNTTAAALHRFCHWQGVQCAANRVVRLVIQDMDLGGVFAPDTLSKLDQLRVLSLHNNSLTGAIPDLSGLTNLKSLFLHNNRFNDSLPPSLFSLHRLRTLDFSHNNLSGHIPTAFTKLDRLYSLRLSWNRFNGTVPPFNQSSLKTFDVSGNNLTGPVPLTPTLFRFDASSFSSNPGLCGEIIRKECHPSAPFFGPIPASSPPPAVILGQSAKVHGMNGIFRQPYEKKRDRTAVIVGFSAGLVILVVSLVCFAVTLRRQRRNSVGGESKKEVAMRSGYMGSDAAATAEAAAAAAMQVEQERELEEKVRRAEVVAKSGSLVFCAGEAQVYTLEQLMKGSAELLGRGCLGTTYKAVLDNRLIVTVKRLDAGKMASHATKEVFERHMESVGGLRHPNLVPVRAYFQAKDERLVIYDYQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSSNVLLGPDFEACITDYCLTLLANPSSFHEDAESAAYRAPETRNPKHQPTPKSDVYSYGVLLMELLTGKSPSEIPFLVPSDMLSWVRSIRDDNGGDDSRMDMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLENNNTESDLRQ 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123g00006 659 SUPERFAMILY Protein kinase-like (PK-like) 385 644 IPR011009 -
Stsc123g00006 659 Pfam Protein kinase domain 385 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc123g00006 659 SUPERFAMILY L domain-like 33 225 - -
Stsc123g00006 659 FunFam Nuclear pore complex protein NUP107 25 183 - -
Stsc123g00006 659 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 8 643 IPR046959 -
Stsc123g00006 659 Gene3D Transferase(Phosphotransferase) domain 1 461 657 - -
Stsc123g00006 659 Gene3D Phosphorylase Kinase; domain 1 351 459 - -
Stsc123g00006 659 Gene3D Ribonuclease Inhibitor 186 234 IPR032675 -
Stsc123g00006 659 Gene3D Ribonuclease Inhibitor 26 185 IPR032675 -
Stsc123g00006 659 ProSiteProfiles Leucine-rich repeat profile. 95 117 IPR001611 GO:0005515
Stsc123g00006 659 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Stsc123g00006 659 ProSiteProfiles Protein kinase domain profile. 381 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123g00006 Stsc-Chr123 42252 46097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123g00006 28 649 Receptor kinase-like Gene Family AT5G43020 57.953 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc123g00006 Pkinase 6.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc123g00006 - - gmx:100817172 928.317