Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1239g00001 ATGGCTGTTACTATAAGAGGATTGAAAATGCGAAAGAGGCATAGCCCTCAGAATTACATGCATCACATTGAGTTGATTTCGAAACTTCGGCATTCCCACTTGATCAGTGCTCTTGGTCATTCATTTGAGTGCAACCAGGATGATTCAAGTGTCAGCACTATATTTCTCGTATTTGAGTTTGTTCCAAACAAAACTTTAAGGAGCTGTGTCTCTGGATCTGTTAGCGAAAAGCTTTCTTGGACGCAGAGGATATTAGCTGCGATTGGAGTGGTAAAAGGCATTCAATTCTTGCACACAGGGATAGTGCCTGGATTATATTCCAATAATCTCAAGATAACTGATGTTCTTTTGGATAACAATCTTAATGTTAAGATAAGCAGTTATAATATCCCACTCTCTGCTGAAACTAGAAGAACGGTCGGCAATGGACCTTACCCTGGATTAAAAGGAAATGTCCAAGAAAGTCGGGAGATCGGTAATTTGGCTTATCGATTTCAGGCGCTTATCGCGGATGATCGATTAGAGTACCGACCTTCATGGATTAGCAAGGACAGCCATGCATGGATGACGTTCGAGGTGCATAAAAGGGTCATGGAAAATAAGGTTATGGAGTTTTATGCCGAGGTGCGTCACACCAGATGCTCTAGTAGCTTCCGTCCGTTTGTCCCACCGGTAAGGGAATTTTCATTCAACCACATTGAGTAA 705 0.4213 MAVTIRGLKMRKRHSPQNYMHHIELISKLRHSHLISALGHSFECNQDDSSVSTIFLVFEFVPNKTLRSCVSGSVSEKLSWTQRILAAIGVVKGIQFLHTGIVPGLYSNNLKITDVLLDNNLNVKISSYNIPLSAETRRTVGNGPYPGLKGNVQESREIGNLAYRFQALIADDRLEYRPSWISKDSHAWMTFEVHKRVMENKVMEFYAEVRHTRCSSSFRPFVPPVREFSFNHIE 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1239g00001 234 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 130 - -
Stsc1239g00001 234 Gene3D Transferase(Phosphotransferase) domain 1 2 162 - -
Stsc1239g00001 234 Pfam Protein tyrosine and serine/threonine kinase 2 130 IPR001245 GO:0004672|GO:0006468
Stsc1239g00001 234 ProSiteProfiles Protein kinase domain profile. 1 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1239g00001 234 SUPERFAMILY Protein kinase-like (PK-like) 8 129 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1239g00001 Stsc-Chr1239 5587 8827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1239g00001 3 150 Miscellaneous Gene Families AT3G03770 63.333 3.15e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Stsc1239g00001 PK_Tyr_Ser-Thr 1.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1239g00001 - - adu:107462774 290.426