Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123903g00001 ATGCGTGGGTCTTCAACTTGGGATGTGTGGTTGCTTGCTGCCAGGATGCCTTCCACGCATATGCGTGCTCTTCCACGCATATGCGTGGAGGCTGCCCTGTTTTGCTTCCCAACTCTGTTTATTCATGTTCTTTGCTTCAACCTTGCTAGAAATGATGCTGCTAACACTACCGACACTGCTCCCCCCGAGAACGGCCAGGGAGGTGGCGCCGTCGCTGCTGATGTCAATTTCCCGCCTCAGCTTGCCAAGCCTTTGATATCTGAGAACGGCTTGACCGGAACCACCACCCGCAGTGGCACTGACAAGGACCAATCCGGCGGCGAGGAAGAGACCACCAGCAAGCGGCGACGTAGGAGCCGCTGGGACCCGCAGCCCGAATCCAACGACCAGAGCAACAGTGGCGGTGGCGATGCCGATGCCGCCGGCACCAAAACGAAGAGGAGGAAGTCGCGGTGGGCGGATGACGATCCGAAGCCAGTGATTCAGCTTCCTGATTTCATGGGAGGTATTGAATTCGATCCTGAGATTCAAGCTTTGAATAGTAGGCTACTTGAGATTAGTCGAATGTTGCAATCGGGTTTGCCTTTAGATGATCGCCCTGAAGGTGCTCGATCCCCTTCACCTGAACCTATATATGATAACATGGGAATTAGGATTAACACTAGGGAGTATCGTGCTCGTGAGAGATTGCAGAAGGAGAGGCAGGAGATTATATCTCAGATTATCAAGAAAAACCCTGCCTTTAAGCCCCCAGCTGATTATAGGCCACCGAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAATACCCGGGTTACAATTTCATAGGGCTGATTATTGGCCCTAGAGGTAACACCCAGAAGCGGATGGAGAAAGAAACCGGTGCTAAAATTGTGATTCGGGGTAAAGGATCAGTGAAAGAAGGTAGGCTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCGGAGAATGAGGATTTGCATGTTTTAGTGGAGGCAGAGACACCGGAATCGCTTGAAGCTGCTGCGGGTATGGTGGAGAAGCTCTTGCAACCTGTGGATGAGGTATTGAATGAGCACAAGAGGCAACAGCTTAGGGAACTTGCAGCTTTAAATGGGACGATTAGGGACGAAGAGTATTGTCGATTGTGTGGTGAACCTGGTCATCGTCAATATGCTTGTCCTACAAGGACTTCAACATTTAAGAGTGAGGTTGTCTGTAAACATTGTGGTGATGGTGGACATCCAAGCATAGATTGCCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCCTGGCAGAGTTGGGAGGTACTGTTCCTGAATCGGCAACAAAGCAAACCGCTACATTAGCAATTGGTCCCGGTAATTCTGGAAGTAATCCCCCTTGGGCAAACAATAATAGTAATACTGCTTCAACAGGTAGTGCTACAGCACACCCTGGCTTAGGTTCTGCTATGATTAAAAAGGAAATCGATGATACAAATTTGTACATTGGGTATTTGCCACCCACTCTTGATGATGATGGTCTGATCCAACTGTTTCAACAATTTGGCGAGATTGTTATGGCCAAAGTTATCAAGGATCGGGTGTCAGGTTTAAGTAAAGGATATGGATTTGTGAAGTATGCTGATATTCAAATGGCAAATAATGCAATTTCGGCCATGAATGGTCAGCGCCTTGAGGGCCGGACCATTGCTGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGTCCACCAGCATCATCTGTGCCCACTTATCCTGTTCAAAGCCAGCCACTTGGTGCCTATCCATCCCAGCAATATGCTGGTGGTGGTCCAATTGGTAGTGCGCCCCCTCCAAGTTATGGTGGTACACCCGTTCCATGGGGTCCTCCTGCTCCTCCTCCTCCTCCGTATGCGGCTTATGCGCCACCTCCTCCTGGGTCAACAATGTATCCTCCTATGCAAGGTCAGCCTATGCCTCCCTATGGTGTTCAATATCCGCCTGTACAGACAGGCCCTCCTGGTGCCACATCCCAGCCTGCATCCAGTAGCGAAGTTCAGCAGAGTTACCCCCCTGGAGTGCAGTCTGACAATAGTACTACTACTCAGTCTGTACCCTCTATATATGGGAACTCAGTGCCTTCAATGCCTCCACCACCTCAACCTACTTACCCTGCTTCATATGGTTATCCGCCATACTACACTGCAGTTCCTCCACCACCTCCCCCGTCTGCGCCTGTTCCTGCCTCTACTACAGAGCAGTCCCACATCGGGAATGTGCCTTGGGCCAGTAATCCTCCTGTACCGCCTCCTGCTTCATCTGCAGAGAAGACAACATATGGGGCAGATCAATCACAGGGACTTGGCAATGTGCCTTGGGCCACAAATCCTCCAATGCCTCCTCCTGCTTCGTCAGCTGCGGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2472 0.5028 MRGSSTWDVWLLAARMPSTHMRALPRICVEAALFCFPTLFIHVLCFNLARNDAANTTDTAPPENGQGGGAVAADVNFPPQLAKPLISENGLTGTTTRSGTDKDQSGGEEETTSKRRRRSRWDPQPESNDQSNSGGGDADAAGTKTKRRKSRWADDDPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTATLAIGPGNSGSNPPWANNNSNTASTGSATAHPGLGSAMIKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRVSGLSKGYGFVKYADIQMANNAISAMNGQRLEGRTIAVRVAGKPPQPVVPPGPPASSVPTYPVQSQPLGAYPSQQYAGGGPIGSAPPPSYGGTPVPWGPPAPPPPPYAAYAPPPPGSTMYPPMQGQPMPPYGVQYPPVQTGPPGATSQPASSSEVQQSYPPGVQSDNSTTTQSVPSIYGNSVPSMPPPPQPTYPASYGYPPYYTAVPPPPPPSAPVPASTTEQSHIGNVPWASNPPVPPPASSAEKTTYGADQSQGLGNVPWATNPPMPPPASSAADSEYEKFMAEMK 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123903g00001 823 Gene3D - 462 582 IPR012677 -
Stsc123903g00001 823 SMART c2hcfinal6 380 396 IPR001878 GO:0003676|GO:0008270
Stsc123903g00001 823 SMART c2hcfinal6 406 422 IPR001878 GO:0003676|GO:0008270
Stsc123903g00001 823 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 259 385 IPR036612 GO:0003723
Stsc123903g00001 823 PANTHER RNA-BINDING PROTEIN RELATED 103 622 IPR045071 -
Stsc123903g00001 823 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 500 578 IPR000504 GO:0003723
Stsc123903g00001 823 Pfam KH domain 274 347 IPR004088 GO:0003723
Stsc123903g00001 823 Pfam Splicing factor 1 helix-hairpin domain 148 255 IPR032570 -
Stsc123903g00001 823 MobiDBLite consensus disorder prediction 83 160 - -
Stsc123903g00001 823 CDD KH-I_BBP 258 351 - -
Stsc123903g00001 823 MobiDBLite consensus disorder prediction 195 214 - -
Stsc123903g00001 823 Gene3D K Homology domain, type 1 251 379 IPR036612 GO:0003723
Stsc123903g00001 823 Gene3D - 380 432 - -
Stsc123903g00001 823 MobiDBLite consensus disorder prediction 675 715 - -
Stsc123903g00001 823 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 502 571 IPR000504 GO:0003723
Stsc123903g00001 823 ProSiteProfiles Zinc finger CCHC-type profile. 407 421 IPR001878 GO:0003676|GO:0008270
Stsc123903g00001 823 FunFam splicing factor-like protein 1 480 582 - -
Stsc123903g00001 823 SMART rrm1_1 501 574 IPR000504 GO:0003723
Stsc123903g00001 823 SUPERFAMILY RNA-binding domain, RBD 497 589 IPR035979 GO:0003676
Stsc123903g00001 823 MobiDBLite consensus disorder prediction 102 124 - -
Stsc123903g00001 823 Gene3D - 173 250 IPR047086 -
Stsc123903g00001 823 SUPERFAMILY Retrovirus zinc finger-like domains 377 423 IPR036875 GO:0003676|GO:0008270
Stsc123903g00001 823 ProSiteProfiles Zinc finger CCHC-type profile. 381 395 IPR001878 GO:0003676|GO:0008270
Stsc123903g00001 823 ProSiteProfiles Type-1 KH domain profile. 274 346 - -
Stsc123903g00001 823 MobiDBLite consensus disorder prediction 653 823 - -
Stsc123903g00001 823 MobiDBLite consensus disorder prediction 579 595 - -
Stsc123903g00001 823 FunFam splicing factor-like protein 1 251 379 - -
Stsc123903g00001 823 MobiDBLite consensus disorder prediction 455 483 - -
Stsc123903g00001 823 MobiDBLite consensus disorder prediction 304 325 - -
Stsc123903g00001 823 MobiDBLite consensus disorder prediction 577 632 - -
Stsc123903g00001 823 MobiDBLite consensus disorder prediction 781 796 - -
Stsc123903g00001 823 MobiDBLite consensus disorder prediction 141 158 - -
Stsc123903g00001 823 FunFam splicing factor 1 379 432 - -
Stsc123903g00001 823 SMART kh_6 259 351 IPR004087 GO:0003676
Stsc123903g00001 823 MobiDBLite consensus disorder prediction 87 101 - -
Stsc123903g00001 823 MobiDBLite consensus disorder prediction 716 752 - -
Stsc123903g00001 823 MobiDBLite consensus disorder prediction 653 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123903g00001 Stsc-Chr123903 40 4579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123903g00001 492 689 Eukaryotic Initiation Factors Gene Family AT3G16380 26.339 8.31e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc123903g00001 K13095 - gmx:100800982 1087.4