Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1237g00002 ATGGCTGACCATGGCATCACAATGTCGCTTTCCCACACCTCCGACTCATCCTCCTCGGAGCACAACACCCCCGCCACCGTTGCTGCCGTCGCCTCCAGGAGGCTCCCACCTTCCTCGTCCGCCGGGAACCACTCATCATACCACCATGCGCTTTCCGAGCCACCGCCTCAGAAGAAGCCACGTGGCAGGCCTCCGGGTTCAAAGAACAAGCCGAAGCCGCCCGTTGTCATCACCCAAGAAAGCGACCAGGTGATGAAACCGGTGGTGATCGAGGTTGCCGCCGGTTCAGACGTGGTGGAGGCGGTGGTGAATTTTGCTCGAAGGCGCCAGGTTAGCCTCTCGGTGCTGAGTGCTTCAGGAACCATTGCTAACGTCACCTTACGTCACCCTTATTCACATGCTCCTGCATTAACTCTCCATGGACCCTTCACCTTGTTGTCCTTTACCGGAAGCTACATCTCTGGCCCTTTTACTCCTTCACCTCCTCCTCGTCCTCCTCTTCCTCTTGTCTCTTCCGCTCCAACGATTCTTTGTTCTTCTTCTGCTGCTGGTTCAGCTTCACCTATCCCCACCAGCTCCAGCTTCGCTGTTTCCTTCTCCGGTTCCCAGGGTCAGATCTTCGGCGGAGTTGTGGCCGGGACACTCATGGCGGCCAGCACGGTGGTGGTGTCCGCCTCTGTCTTCAAGAGACCTGAGTATCACCAGGTTGGGTTGAATCCGAATGGAGAAGGTGGTGCTGGTGGCGGCGGGCGTGATGATAAAGACGATGCTGATCGTCACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTAATAATAATAATAACGGTAATGCAGGTGGTGGTGATCACGGTGGTTGTGGTGGAGTTGTGAATGAGAATGCGAACCCTCTGACTACTGTGTTCAATGTGGGGAATGCTGGTGGTGGTGGTGGTGGAGGAAACGGTTTGAATAATTGCCACCCTGGTGATGTGAACGTCATGCAATGGGGCCACACTCTCTCGGCCTCTCGCTCTGCGAACTACTGA 1044 0.5345 MADHGITMSLSHTSDSSSSEHNTPATVAAVASRRLPPSSSAGNHSSYHHALSEPPPQKKPRGRPPGSKNKPKPPVVITQESDQVMKPVVIEVAAGSDVVEAVVNFARRRQVSLSVLSASGTIANVTLRHPYSHAPALTLHGPFTLLSFTGSYISGPFTPSPPPRPPLPLVSSAPTILCSSSAAGSASPIPTSSSFAVSFSGSQGQIFGGVVAGTLMAASTVVVSASVFKRPEYHQVGLNPNGEGGAGGGGRDDKDDADRHNNNNNNNNNNNNNNNSNNNNNGNAGGGDHGGCGGVVNENANPLTTVFNVGNAGGGGGGGNGLNNCHPGDVNVMQWGHTLSASRSANY 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1237g00002 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 229 IPR005175 -
Stsc1237g00002 347 ProSiteProfiles PPC domain profile profile. 82 252 IPR005175 -
Stsc1237g00002 347 MobiDBLite consensus disorder prediction 7 26 - -
Stsc1237g00002 347 Gene3D - 85 241 - -
Stsc1237g00002 347 MobiDBLite consensus disorder prediction 57 71 - -
Stsc1237g00002 347 MobiDBLite consensus disorder prediction 234 286 - -
Stsc1237g00002 347 MobiDBLite consensus disorder prediction 1 80 - -
Stsc1237g00002 347 MobiDBLite consensus disorder prediction 262 285 - -
Stsc1237g00002 347 CDD DUF296 86 223 IPR005175 -
Stsc1237g00002 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 23 292 IPR014476 GO:0003680
Stsc1237g00002 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1237g00002 Stsc-Chr1237 15644 16687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1237g00002 58 254 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 43.719 8.94e-44 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1237g00002 - - adu:107463674 380.178