Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123443g00001 ATGAAGCTTTCAACATCAGGGTTGCCTCAGCAGGGACAACATGAAGGAGGGGAGAAGAAGTGCTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCTTTGGTGTCCCTACCATCTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAGCAGAGAAGTTGATGGCCACATACCGAATTACCCGAGTTTGCCGCCCCAGTTGATTTGCCAACTTCACAATGTTACGATGCATGCAGATGTTGAAACGGATGAAGTTTATGCCCAAATGACATTGCAGCCGTTAACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAATTGGGAGTTCCAAGTAAGCAGCCCTCGAATTATTTTTGCAAGACCTTAACGGCTAGTGACACCAGCACACATGGAGGGTTTTCCGTTCCACGTCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCACAGCAACCTCCTGCGCAAGAACTAATCGCTAGGGATCTCCATGATGTTGAGTGGAAATTTCGTCATATTTTTAGGGGACAGCCAAAGAGGCACCTTCTTACTACCGGCTGGAGTGTATTTTTCAGTGCCAAAAGACTTGTGGCAGGAGATTCTGTGCTTTTCATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCTAATAGACCACAGACTGTAATGCCTTCTTCAGTTCTATCCAGTGACAGCATGCATATTGGGCTTCTGGCAGCTGCCGCCCATGCTGCAGCAACTAATAGTTGTTTCACAGTGTTCTATAATCCAAGGTTGTGA 822 0.4745 MKLSTSGLPQQGQHEGGEKKCLNSELWHACAGPLVSLPSAGTRVVYFPQGHSEQVAATTSREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGVPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFFSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123443g00001 273 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Stsc123443g00001 273 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Stsc123443g00001 273 Gene3D - 127 230 IPR015300 -
Stsc123443g00001 273 SUPERFAMILY DNA-binding pseudobarrel domain 113 258 IPR015300 -
Stsc123443g00001 273 CDD B3_DNA 128 229 IPR003340 GO:0003677
Stsc123443g00001 273 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 272 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc123443g00001 273 SMART B3_2 129 231 IPR003340 GO:0003677
Stsc123443g00001 273 FunFam Auxin response factor 127 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123443g00001 Stsc-Chr123443 2 2939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123443g00001 1 272 B3 DNA Binding Superfamily AT1G30330 86.765 7.91e-166 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc123443g00001 B3 6.2e-21 CL0405