Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123427g00001 ATGCTGCATATAAACAATGAGGGAAATCTTGATCTAGTTAGCCAAAATGGCAGTGTAATTTGGTCTGCAAATTCAACAAAGAAGGTTCAGAGTCCAATTCTTCAGCTCTTAGATTCCGGGAACCTTGTTCTGAGAGATGAAAATGACCAAGATCCTGAGAAATTTCTATGGCAAAGCTTTGATTACCCTTGTGATACACTCTTGCCAGGAATGAAGCTAGGATGGGACCTTAGAACTGGTCTAGAGAGGCGTGTTGCTGCTTGGAAGAATTGGGATGATCCATCACCAGGTGATTTTTCTTGGGGTATCTCAATTCAAGGTGTTCCTCAAGTTATGATGTGGAGAGGCTCTATTGAATTCTACCGTGGAGGTCCATGGACTGGTCTTGGATTCAGTGGTGCACCAGAGTTGAAGACTAATCCGCTTTTCGAGTTCGAGTTTGTCTCCAATGAAGATGAAGTGTACTACTCATTCAATCTCACAAACAAGTCAATGATTTCAAGGGTTGTTATGAACCAAACAATGGTTACTCGCCAGAGATACATTTGGATTGAAGAAGCCAAATCTTGGAGGCTATATGCTTCTGTGCCTAGAGATAACTGTGATTCTTATAGTGTCTGTGGTCCTAATGCAAATTGTATCATAGGTGATTCACCAGTGTGCCAGTGTTTGACAGGTTTTGAGCCTAAATCTCAGCAGAGTTGGGACATGATGGATTGGACTCAAGGATGCAAGCTCACTGAGAAATTGAGCTGTAATGATACCAGCAAAGATGGGTTTATGAATTTCAGTGGATTGAAGTATCCTGATACTTCACATTCTTGGGTCAATGTGAGTATGAATCTCAATCAATGCAGGGAAGAATGCTTGAAGAATTGTTCCTGTAAAGCGTATGCGAATTCGGATGTTAGAGGTGAAGGTAGTGGCTGTTTGATGTGGTTCAGTGAGCTCCAAGATATCAGACAGTTTTCTGGTGGCGGCGGTCAAGATGTTTATATTCGAATGAAAATCTCGGCTATAGGTGGGAGAGGGCATAACATGAAGATTGCAGTGATATTCATAATCCTTGCCTCCGTAATTGTGGTGTCTCTGGTTTTATACTTTATTGGCAAGAGAATCATAAACTTCAGAGCTAAGTACACAAAGAAGAAGTCATTGGTGGAGAAGCATGATGATGAAGGTGATAAAGAAGATCTAGAGCTTCCAATCTTTGATCTTGCTACAATTGTCAAAGCAACTGGTGACTTCTCATTCAGCAATAAACTTGGAGAAGGTGGATTTGGGACTGTATACATGGGTACCTTAGCAGATGGACAACAAATTGCTGTGAAGAGACTCTCACAGAGTTCTGGACAAGGATTGAATGAATTTAAGAATGAAGTGATATTAATCGCCAAACTTCAGCATCGAAACCTTGTTAAGCTTCTTGGATGCTGTATTCAAGGAGAGGAGAAGATGCTTGTATATGAATACATGCCTAACAAAAGCCTAGACTCTTTCATATTTGATCATGCCAAGAGTAAAGTTCTAGATTGGTCCAAGCGCTTCAACATCATTTGCGGAGTTGCGCGAGGACTTCTTTATCTTCATCAAGATTCTAGGTTGAGGATAATACATAGAGATCTTAAAGCAAGCAATGTGTTACTTGACAGCGAGTTGAATCCTAAGATATCTGATTTCGGTATGGCTAAAACTTTTGGAGGAGATCAAACAGAAGGAAATACGAATAGGGTGGTTGGAACATACGGCTACATGGCGCCTGAATATGCCATTCATGGACTATTTTCTGTCAAATCCGATGTCTTCAGCTTTGGTGTATTACTTTTGGAGATAGTAAGTGGAAAAAAGAACAGAGGATTTTCCCAATCAAAGAACTATATAAACCTTATTGGACATGCATGGATACTGTGGAAAGAAAACAGGCCACTAGAGTTGATTGATCCTTGCATGGAGAATTCATGTGATGTATCAGAAGCATTGCGTTGCATCCACATAAGCCTTCTATGTGTGCAACAGAACCCTGATGATAGGCCAACAATGTCAAATGTGGTTGTGATGTTGGGAAGTGACGGTCCCTTGCCCCAACCTAAGGAGCCTGCTTTTCTCACTGAGAAGTACTCTTTTGAAGCAGACTCTTGTAGCAAACAAATATCATCTTCTACTAATGAAATAAGTGTTACCATGTTAGAGCCTCGTTAG 2199 0.4079 MLHINNEGNLDLVSQNGSVIWSANSTKKVQSPILQLLDSGNLVLRDENDQDPEKFLWQSFDYPCDTLLPGMKLGWDLRTGLERRVAAWKNWDDPSPGDFSWGISIQGVPQVMMWRGSIEFYRGGPWTGLGFSGAPELKTNPLFEFEFVSNEDEVYYSFNLTNKSMISRVVMNQTMVTRQRYIWIEEAKSWRLYASVPRDNCDSYSVCGPNANCIIGDSPVCQCLTGFEPKSQQSWDMMDWTQGCKLTEKLSCNDTSKDGFMNFSGLKYPDTSHSWVNVSMNLNQCREECLKNCSCKAYANSDVRGEGSGCLMWFSELQDIRQFSGGGGQDVYIRMKISAIGGRGHNMKIAVIFIILASVIVVSLVLYFIGKRIINFRAKYTKKKSLVEKHDDEGDKEDLELPIFDLATIVKATGDFSFSNKLGEGGFGTVYMGTLADGQQIAVKRLSQSSGQGLNEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLVYEYMPNKSLDSFIFDHAKSKVLDWSKRFNIICGVARGLLYLHQDSRLRIIHRDLKASNVLLDSELNPKISDFGMAKTFGGDQTEGNTNRVVGTYGYMAPEYAIHGLFSVKSDVFSFGVLLLEIVSGKKNRGFSQSKNYINLIGHAWILWKENRPLELIDPCMENSCDVSEALRCIHISLLCVQQNPDDRPTMSNVVVMLGSDGPLPQPKEPAFLTEKYSFEADSCSKQISSSTNEISVTMLEPR 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123427g00001 732 ProSitePatterns Protein kinases ATP-binding region signature. 422 444 IPR017441 GO:0005524
Stsc123427g00001 732 ProSiteProfiles EGF-like domain profile. 197 233 IPR000742 -
Stsc123427g00001 732 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 379 491 - -
Stsc123427g00001 732 CDD STKc_IRAK 422 687 - -
Stsc123427g00001 732 ProSiteProfiles Protein kinase domain profile. 416 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc123427g00001 732 CDD PAN_AP_plant 249 334 - -
Stsc123427g00001 732 PIRSF SRK 1 732 IPR024171 GO:0004674
Stsc123427g00001 732 Pfam S-locus glycoprotein domain 121 231 IPR000858 GO:0048544
Stsc123427g00001 732 Pfam D-mannose binding lectin 2 89 IPR001480 -
Stsc123427g00001 732 ProSiteProfiles PAN/Apple domain profile. 252 336 IPR003609 -
Stsc123427g00001 732 ProSiteProfiles Bulb-type lectin domain profile. 1 57 IPR001480 -
Stsc123427g00001 732 Gene3D Transferase(Phosphotransferase) domain 1 492 691 - -
Stsc123427g00001 732 Pfam Domain of unknown function (DUF3403) 691 732 IPR021820 GO:0004674
Stsc123427g00001 732 Gene3D Phosphorylase Kinase; domain 1 389 491 - -
Stsc123427g00001 732 Pfam Protein tyrosine and serine/threonine kinase 417 686 IPR001245 GO:0004672|GO:0006468
Stsc123427g00001 732 Gene3D - 1 60 IPR036426 -
Stsc123427g00001 732 SUPERFAMILY alpha-D-mannose-specific plant lectins 2 94 IPR036426 -
Stsc123427g00001 732 Pfam PAN-like domain 252 320 IPR003609 -
Stsc123427g00001 732 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 492 694 - -
Stsc123427g00001 732 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 2 678 - -
Stsc123427g00001 732 SUPERFAMILY Protein kinase-like (PK-like) 399 708 IPR011009 -
Stsc123427g00001 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Stsc123427g00001 732 SMART ntp_6 255 335 IPR003609 -
Stsc123427g00001 732 SMART serkin_6 416 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123427g00001 Stsc-Chr123427 1055 4096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123427g00001 362 732 Receptor kinase-like Gene Family AT4G23140 53.506 3.82e-133 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc123427g00001 PK_Tyr_Ser-Thr 1.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc123427g00001 - - cave:132173746 1019.61