Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123411g00001 ATGGGTAGAGCTCCATGCTGTGAGAAAATGGGGTTGAAGAAGGGGCCATGGACCCCAGAAGAAGATCAAATCCTCATCAATTATATCAACACAAATGGTCACAACAATTGGCGTGCCCTTCCCAAACAAGCTGGATTATTGAGATGTGGAAAGAGTTGTAGATTGAGATGGATAAATTATCTGAGGCCAGATATCAAAAGGGGCAACTTTACCAGTGAGGAAGAAGAGACAATAATCAAGTTACATGAAATGTTGGGGAATAGATGGTCAGCAATTGCAGCAAGATTACCGGGTCGCACAGATAACGAGATTAAAAATGTTTGGCACACCCACTTGAAGAAGAGGTTGCCCGCACAACACAATAACAACACAAAGAAGAAGAAGAACTTGGAAATTACCAAAAAGTCCAACAAAAAATCTTCAAAACAAAGACAAGAAAAAGAAAAACAAGAAGAAGAAGTGGAACACATCAAAACTGAGGGAAGCCCAATGTCTCCTACTACACAGTGTTCAAGCAGTGGTAGCATTAATAATAAAAATGGTGGGTCAATGAACAATTCAAGTGGGGAATCGATTAATAACGAAGATGATGGAAATAATAATAAGGATGATGATAATTTGGCATTGGACGATGATTTTTGGTCTGAAGTTTTGTCATCGGATAACTCCAATGATGAGGATATTGCAAGAAAATTTGAGGACATTGAATGTAGTGACTTGTTCCAGTTTCCATTGTTCTCTTCATCACCATCAAGTGTTGCATGTGATGGCATAGATTTTTGGTATGATTTTTACTCTAAATCTTTGGAATTGCCACAATTGTGA 825 0.383 MGRAPCCEKMGLKKGPWTPEEDQILINYINTNGHNNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTSEEEETIIKLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPAQHNNNTKKKKNLEITKKSNKKSSKQRQEKEKQEEEVEHIKTEGSPMSPTTQCSSSGSINNKNGGSMNNSSGESINNEDDGNNNKDDDNLALDDDFWSEVLSSDNSNDEDIARKFEDIECSDLFQFPLFSSSPSSVACDGIDFWYDFYSKSLELPQL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123411g00001 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc123411g00001 274 MobiDBLite consensus disorder prediction 124 159 - -
Stsc123411g00001 274 CDD SANT 69 112 IPR001005 -
Stsc123411g00001 274 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc123411g00001 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc123411g00001 274 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Stsc123411g00001 274 CDD SANT 16 61 IPR001005 -
Stsc123411g00001 274 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc123411g00001 274 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc123411g00001 274 Gene3D - 69 116 - -
Stsc123411g00001 274 Gene3D - 11 67 - -
Stsc123411g00001 274 SMART sant 66 114 IPR001005 -
Stsc123411g00001 274 SMART sant 13 63 IPR001005 -
Stsc123411g00001 274 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 226 - -
Stsc123411g00001 274 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc123411g00001 274 MobiDBLite consensus disorder prediction 161 195 - -
Stsc123411g00001 274 MobiDBLite consensus disorder prediction 111 208 - -
Stsc123411g00001 274 Coils Coil 133 160 - -
Stsc123411g00001 274 FunFam Myb transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123411g00001 Stsc-Chr123411 1938 6185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123411g00001 1 274 MYB Transcription Factor Family AT2G31180 51.429 1.16e-84 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc123411g00001 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc123411g00001 K09422 - gmx:100775603 276.174