Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123358g00001 ATGGAGGAGAAGAAGAAGATGACGTCACGCTCAGGGAATGGTGGCCATGCTGCCAATAGCGGAAAGACACGTGTCGGAAAGTACGATCTGGGAAGGACACTGGGCGAGGGGAATTTCGCGAAGGTGAAGTTTGCGAAGAATACGGTCACCGGAGACAATGTCGCCATCAAGATTCTCGACAAGGAGAAAATTCTCAAGCACAAGATGATCGACCAGATAAAACGAGAGATATCAACAATGAAACTGATTAGACACCCTAATGTAATACGTATGTATGAGGTCATGGCTAGCAAGACAAAAATATACATTGTATTGGAATTTGTAACTGGTGGAGAGCTGTTTGATAAAATTGCAAGCAGTGGGAGATTGAAAGAAGAAGAAGCTAGAAGATATTTTCAACAGCTAATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTGCCATAGAGACCTAAAGCCTGAGAACTTGTTGCTGGATGCTTCGGGAACGCTCAAAGTATCAGATTTTGGATTGAGTTCACTGCCTCAACAAGTTCGGGAAGATGGGCTGCTTCACACAACATGTGGTACACCAAATTATGTTGCTCCAGAGGTGATCCACAACAAAGGCTATGATGGTGCAAAGGCTGATCTCTGGTCTTGTGGTGTCATTCTTTTTGTTTTAATGGCAGGCTATTTGCCCTTTGAAGACAACAATCTTGTGAATTTGTATAAAAAGATTTTCAAGGCTGAGTTCACTTGTCCTCCTTGGTTCTCTACGAATGCAAAGAAGTTAATCACAAGAATACTTGAACCCGATCCTGCCAAACGAATTACGATTGCTGAAGTTATTGAGAATGAATGGTTCAAGAAGGGATTCAAGCCTCCAAAATTTGAGCAGGCCAATGTTACTCTTGATGATATAGATTCTATTTTTAGTGAATCAATGGATTCAAAAAACCTTGTTGTTGAGAGGCGTGAAACGAGGCCTGCGGAACCTGTGGCCATGAATGCTTTTGAGCTTATCTCTACCTCTCAGGGCCTCAATCTCAGTAGTCTTTTCGAGAAACAAATGGTATTTTTCTTGTTA 1071 0.4192 MEEKKKMTSRSGNGGHAANSGKTRVGKYDLGRTLGEGNFAKVKFAKNTVTGDNVAIKILDKEKILKHKMIDQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIASSGRLKEEEARRYFQQLICAVDYCHSRGVCHRDLKPENLLLDASGTLKVSDFGLSSLPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEDNNLVNLYKKIFKAEFTCPPWFSTNAKKLITRILEPDPAKRITIAEVIENEWFKKGFKPPKFEQANVTLDDIDSIFSESMDSKNLVVERRETRPAEPVAMNAFELISTSQGLNLSSLFEKQMVFFLL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123358g00001 357 FunFam Non-specific serine/threonine protein kinase 21 323 - -
Stsc123358g00001 357 Gene3D Kinase associated domain 1, KA1 325 354 - -
Stsc123358g00001 357 Gene3D Phosphorylase Kinase; domain 1 17 107 - -
Stsc123358g00001 357 SMART serkin_6 28 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc123358g00001 357 Pfam Protein kinase domain 28 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc123358g00001 357 Pfam NAF domain 327 354 IPR004041 GO:0007165
Stsc123358g00001 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Stsc123358g00001 357 SUPERFAMILY Protein kinase-like (PK-like) 25 319 IPR011009 -
Stsc123358g00001 357 CDD STKc_SnRK3 27 282 - -
Stsc123358g00001 357 Gene3D Transferase(Phosphotransferase) domain 1 108 289 - -
Stsc123358g00001 357 MobiDBLite consensus disorder prediction 1 24 - -
Stsc123358g00001 357 ProSiteProfiles Protein kinase domain profile. 28 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc123358g00001 357 FunFam Non-specific serine/threonine protein kinase 19 107 - -
Stsc123358g00001 357 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 23 350 - -
Stsc123358g00001 357 ProSiteProfiles NAF domain profile. 325 349 IPR018451 GO:0007165
Stsc123358g00001 357 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123358g00001 Stsc-Chr123358 514 4696 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123358g00001 11 351 CBL-interacting serine-threonine protein kinases AT1G01140 70.262 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc123358g00001 Pkinase 4.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc123358g00001 - - zju:107414012 602.438