Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123320g00001 ATGAGCAACGCAGGACAACAAGGGATTGATGGAGCAGTTCTTGATGACATAATCCGCCGCCTCACGGAGGTCCGATTGGCCAGACCTGGAAAGCAGGTACAGCTCTCTGAAGCCGAGATCAAACAGCTTTGTCTTGCTTCTAAAGACATCTTCCTTCAACAGCCTAATTTGTTAGAACTCGAAGCCCCCATCAAGATTTGTGGTGATATTCATGGGCAGTACAGTGATTTGTTGAGGCTGTTTGAGTATGGAGGATTACCTCCCAGTGCTAACTATCTCTTTTTAGGAGACTATGTTGATCGTGGGAGGCAAAGCTTAGAAACTATATGCCTTTTGCTTGCATATAAAATCAAGTATCCCGAGAACTTTTTCTTGTTGAGGGGAAATCATGAGTGTGCTTCCATTAATAGGATATATGGATTCTACGACGAATGTAAGCGGAGGTTCAATGTGAGGCTCTGGAAAGCCTTTACGGATTCTTTTAACTGTCTTCCTGTTGCAGCCCTTATAGATGATAAAATACTGTGCATGCATGGTGGTCTTTCTCCTGAACTCACAAACTTGGATCAAATTAGGAATTTGCCCCGTCCAACTGCTATTCCAGACACCGGCTTGCTATGTGATCTGCTTTGGTCTGACCCAGGAAGAGATGTGAAGGGTTGGGGTATGAATGACAGAGGAGTTTCTTACACATTTGGCCCTGATAAGGTTGCTGAGTTTTTAACAAAGCATGACTTGGACCTTATTTGCCGTGCTCATCAGGTTGTAGAGGATGGATATGAGTTTTTTGCTGAAAGGCAACTTGTTACAATATTTTCGGCTCCAAACTACTGTGGCGAGTTTGACAATGCTGGTGCCATGATGAGTGTAGATGAAAACTTGATGTGTTCGTTTCAAATTCTCAAGCCTGCAGAGAAAAAGATAAAGTTCGGAATGACAAACAAGATGTGA 951 0.4322 MSNAGQQGIDGAVLDDIIRRLTEVRLARPGKQVQLSEAEIKQLCLASKDIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPSANYLFLGDYVDRGRQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKAFTDSFNCLPVAALIDDKILCMHGGLSPELTNLDQIRNLPRPTAIPDTGLLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVAEFLTKHDLDLICRAHQVVEDGYEFFAERQLVTIFSAPNYCGEFDNAGAMMSVDENLMCSFQILKPAEKKIKFGMTNKM 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123320g00001 316 SUPERFAMILY Metallo-dependent phosphatases 25 309 IPR029052 -
Stsc123320g00001 316 Gene3D - 8 314 IPR029052 -
Stsc123320g00001 316 Pfam Serine-threonine protein phosphatase N-terminal domain 14 61 IPR031675 -
Stsc123320g00001 316 CDD MPP_PP1_PPKL 13 303 - -
Stsc123320g00001 316 ProSitePatterns Serine/threonine specific protein phosphatases signature. 126 131 IPR006186 GO:0016787
Stsc123320g00001 316 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 17 306 - -
Stsc123320g00001 316 PRINTS Serine/threonine phosphatase family signature 125 149 IPR006186 GO:0016787
Stsc123320g00001 316 PRINTS Serine/threonine phosphatase family signature 159 185 IPR006186 GO:0016787
Stsc123320g00001 316 PRINTS Serine/threonine phosphatase family signature 267 283 IPR006186 GO:0016787
Stsc123320g00001 316 PRINTS Serine/threonine phosphatase family signature 92 119 IPR006186 GO:0016787
Stsc123320g00001 316 PRINTS Serine/threonine phosphatase family signature 188 215 IPR006186 GO:0016787
Stsc123320g00001 316 PRINTS Serine/threonine phosphatase family signature 63 90 IPR006186 GO:0016787
Stsc123320g00001 316 PRINTS Serine/threonine phosphatase family signature 245 265 IPR006186 GO:0016787
Stsc123320g00001 316 SMART pp2a_7 35 305 IPR006186 GO:0016787
Stsc123320g00001 316 Pfam Calcineurin-like phosphoesterase 63 255 IPR004843 GO:0016787
Stsc123320g00001 316 FunFam Serine/threonine-protein phosphatase 61 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123320g00001 Stsc-Chr123320 1442 4800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123320g00001 42 248 Calmodulin-binding Proteins AT5G63870 30.242 7.52e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc123320g00001 K06269 - gmx:100811593 614.379