Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123304g00001 ATGAACTTATTTTTAAGATCAGATGTAAAGGATGTTCGCTTTATAGGCATATGCGGCATGGGAGCTATAGGAAAGAAAAATCTTGCTGAAGTCTTGTATATGAAAATTCGAAGCAAATTTGAGAGTAGTTGCACCCTTGACAATGTTAGAGAAGCTTCTGGGCAAAGACATGGCCTGCTGAACTTGCAAAGAGAATTTCTTAGTAAGCTGAAAATTATGGACACAAAGATTGAAGATGTGTATCAAGGAATTGATACAATTAGAAACTTCCTCTTCAATAAAAAAGTTCTACTTGTGCTTGATGATGTAAGTCATATAAGCCAATTAGAGATTTTGGCAGAAAAGGAATGGTTTGGTCCAGGGAGTAGAGTAATAGTGACTACAAGAGACATGCAACTTTTGACATCTCATGGAATATCAGATAAGTATGAGATTGGTTTGCTAAACTAG 450 0.3578 MNLFLRSDVKDVRFIGICGMGAIGKKNLAEVLYMKIRSKFESSCTLDNVREASGQRHGLLNLQREFLSKLKIMDTKIEDVYQGIDTIRNFLFNKKVLLVLDDVSHISQLEILAEKEWFGPGSRVIVTTRDMQLLTSHGISDKYEIGLLN 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123304g00001 149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 149 IPR027417 -
Stsc123304g00001 149 PRINTS Disease resistance protein signature 14 29 - -
Stsc123304g00001 149 PRINTS Disease resistance protein signature 90 104 - -
Stsc123304g00001 149 Gene3D - 1 140 IPR027417 -
Stsc123304g00001 149 Pfam NB-ARC domain 10 148 IPR002182 GO:0043531
Stsc123304g00001 149 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 135 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123304g00001 Stsc-Chr123304 6114 6898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123304g00001 11 149 WRKY Transcription Factor Family AT5G45050 30.000 4.04e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc123304g00001 - - adu:107496788 253.832