Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123282g00001 ATGGAGCAGAAGCATGTTCTGTTGTCTGCATTGAGTGTTGGTGTTGGTTTGGGAGTGGGTCTTGGGTTGAGTACAGGGCAAGCTGTTCAGAAATGGGTTGGTGGAATCAACCATGATTCTGATGAGATTTCTGGGGACCTCATTGTTCTTGAGCTCAAGAAGCTTCTGCTTGATGGTAGAGACCTCAGGATCACATTTGATGACTTCCCTTATTACTTAAGTGAAAAAACTAGTGTGTTGTTGACAAGTGCTGCACATGTTCATTTGAGGCATCTTGATTTTTCCAAGCATACCAGGAACCTTTCTCCAGCAAGTAGAGCTATTTTGCTATCTGGTCCTGGAGAACTATACCAGCAAATGCTTGCTAGGGCTTTGGCGCATCAATTCGATTCGAAGTTGCTGTTGCTAGATATTAATGACTTCTCCCTGAAGATGCAAAGCAAATATGGATGTCCAAAAAAAGAACCGTGTGTGAAGAAGTCCATATCTGAGATGACTTTCGAGCGAATGTCTGGTTTGTTCGGTTCCCTTTCGATCCTCCCTTCAACTGCTGAAACTACAGGTGCTGAAAGTTCGAAAAATCTTTCAAAGCTTCAGAGAAATGGCTCTGCTGCATCTGATATAAGTAGTTCTTCTTCCCATTGTGGTGTAGCAACTCCAGCTCCTTTAAAGCGCACAAGTAGCTTGTGTTTTGATGAAAAGCTATTTGTTCAGTCACTTTACAAGGTCTTGGTTTCTATCTCAGAAACTAGTCCCATCATTTTATACATTAGGGATGTCGAGAGGCTCGTTCTCCAATCAGCAAGGTTATACAACTTGTTACATAAAATGATCATGAAGCTTTCAGGATCTGTGTTAGTACTTGCTTCCCATCTAATAGATACAGAAGATGAATGCAAAGAAATTGATGAAAGACTCACTATGGTGTTCCCTTACAACATTGACATAAATCCTCCTGAAGATGCAACTCATCTTTGCAACTGGAAATCTCAACTGGAAGAGGACATGAGAATGATTCAGTTCCAAGATAACAAGAACCACATCACAGAAGTACTCGCTGCGAATGACATCGATTGTGATGATTTGTCTTCAATATGCCATGCTGACACAATGGTTCTCAGTACATACATTGAAGAAATTGTGGTGTCTGCAATATCTTACCATTTGATGAATACTAAGGATCCTGAATACCGAAATGGAAAGCTAATTATATCAGCAAACAGTTTGTCCCATGGATTGAGCCTGTTCCAAGAAGGCAAGAGCATGAAGACTAATGATTCAAACAAGGAAAATGCTGAAGGTATTGCCGGAGCAAATGTCCGGCGTGACGGCCAGGGACCTGAAAACAAAAATGAAACATCTATCCCTGTAACAAAGAAAGATGGCGAAAATAATGCTCCAGCAAAAGCAGAAGTTCCTGACAACGAGTTTGAGAAGCGGATTAGACCAGAAGTTATCCCTGCAAATGAGATAGGAGTTACATTTGCAGATATTGGTTCATTGGATGAGATCAAAGAATCACTTCAAGAACTGCGAACTCGAGTTGGAGAGCATGAGGCTATGAGGAAGATCAAGAATGAGTTCATGACACATTGGGATGGACTATTAACTAGACCTGGTGAACAAATTCTGGTTCTTGCTGCAACTAACAGGCCATTTGATCTTGATGAAGCAATTATAAGACGATTCGAGCGCAGGATTATGGTTGGTCTTCCATCTGTTGAGAACAGGGAAAAGATCCTGAAAACTCTGCTAGCTAAGGAAAAACACGAAAACTTAGACTTCAAAGAGCTTGCAGCCATGACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCATCACCGCGGCTTATCGACCTGTTAGGGAGTTATTACAGCAGGAGAGAAAGAAGGACATGGAAAAGAAGAAAAAAGAGACAGAAGGCCAAAGCTCTGAAGATGCTTCAGAGAATAAAGAAGATCACCCTCAAATTACTCTGAGGTCTTTAAACATGGATGACATGAGACAGGCAAAGAGTCAGGTGGCTGCTAGTTTTGCATCCGAAGGAACGGTAATGAATGAGCTGAAACAATGGAATGAATTATATGGAGAAGGTGGTTCAAGGAAGAAGCAGCAACTCACTTACTTCCTTTAG 2139 0.4133 MEQKHVLLSALSVGVGLGVGLGLSTGQAVQKWVGGINHDSDEISGDLIVLELKKLLLDGRDLRITFDDFPYYLSEKTSVLLTSAAHVHLRHLDFSKHTRNLSPASRAILLSGPGELYQQMLARALAHQFDSKLLLLDINDFSLKMQSKYGCPKKEPCVKKSISEMTFERMSGLFGSLSILPSTAETTGAESSKNLSKLQRNGSAASDISSSSSHCGVATPAPLKRTSSLCFDEKLFVQSLYKVLVSISETSPIILYIRDVERLVLQSARLYNLLHKMIMKLSGSVLVLASHLIDTEDECKEIDERLTMVFPYNIDINPPEDATHLCNWKSQLEEDMRMIQFQDNKNHITEVLAANDIDCDDLSSICHADTMVLSTYIEEIVVSAISYHLMNTKDPEYRNGKLIISANSLSHGLSLFQEGKSMKTNDSNKENAEGIAGANVRRDGQGPENKNETSIPVTKKDGENNAPAKAEVPDNEFEKRIRPEVIPANEIGVTFADIGSLDEIKESLQELRTRVGEHEAMRKIKNEFMTHWDGLLTRPGEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILKTLLAKEKHENLDFKELAAMTEGYTGSDLKNLCITAAYRPVRELLQQERKKDMEKKKKETEGQSSEDASENKEDHPQITLRSLNMDDMRQAKSQVAASFASEGTVMNELKQWNELYGEGGSRKKQQLTYFL 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123282g00001 712 MobiDBLite consensus disorder prediction 420 476 - -
Stsc123282g00001 712 Coils Coil 501 521 - -
Stsc123282g00001 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 501 628 IPR027417 -
Stsc123282g00001 712 Gene3D - 501 572 IPR027417 -
Stsc123282g00001 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 365 IPR027417 -
Stsc123282g00001 712 ProSitePatterns AAA-protein family signature. 543 562 IPR003960 GO:0005524|GO:0016887
Stsc123282g00001 712 Pfam AAA+ lid domain 592 636 IPR041569 -
Stsc123282g00001 712 Gene3D - 573 675 - -
Stsc123282g00001 712 MobiDBLite consensus disorder prediction 630 658 - -
Stsc123282g00001 712 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 512 711 - -
Stsc123282g00001 712 Pfam ATPase family associated with various cellular activities (AAA) 501 570 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123282g00001 Stsc-Chr123282 2359 7530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123282g00001 488 629 Calmodulin-binding Proteins AT3G56690 36.301 1.15e-14 76.3