Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123268g00001 ATGCACCACAAAGGCACAAACCCAACAAATCCAAACCCTAATCCTCTCACTCTTTTCTCCTTCTCTCTCTCATACTCCACACACACTCTCTCTCTCTCTGCGACCACCATGTCTCACTTCGGAAGGTCAGGACCGCCAGACATCTCCGACACCTACTCCCTCCTTGTACTCAACATCACTTTCCGCACAACCGCCGACGACCTCTTCCCTCTCTTTGACAAGTACGGAAAGGTCGTCGACATCTTCATTCCCAAAGATCGAAGGACTGGCGAGTCTAGGGGTTTTGCCTTCGTGCGTTACAAGTATGCTGATGAGGCTCAGAAGGCCGTTGAAAGGCTCGACGGAAGAATGGTTGATGGTCGGGAAATAACTGTCCAGTTTGCAAAATATGGCCCCAATGCTGAGCGCATTCACAAAGGAAGGATTATTGAATCAATGCCGAGAACAAGGCACAGGTCAAGGAGCCGCAGCCCAAGGAAAAGGTATCGTGATGATTACAGAGACAGGGATTACCGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGTATGAACGGGACAGGTACCGTGGGAAGGACAGAGATTATCGTCGTCGAAGCAGAAGCCGCAGTGCCAGCCCTGATTACAAGAGTCGTGGGAGGGGACGCTATGACGATGATGATCGTCGTAGTAGAAGCCGGAGCCGATCAGTGGATAGCCGCTCCCCTGCACATAGTCCTAGTCCTCGAAGGAGTCCATCACCCCACAAGAGTATGTCTCCTGAAAGGAGTGCGTCTCCGAGAAGTCCTAGAGGTGAAAGTCCTGATAATCGTAGCCGTGATGGACGATCTCTCTCACCTCGCAGTGTCTCACCACGTGGTCGCCCTGATGCTTCACGAAGCCCATCCCCTCGAAATTCAAATGATGAGTAA 909 0.5171 MHHKGTNPTNPNPNPLTLFSFSLSYSTHTLSLSATTMSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIHKGRIIESMPRTRHRSRSRSPRKRYRDDYRDRDYRRRSRSRSYDRYERDRYRGKDRDYRRRSRSRSASPDYKSRGRGRYDDDDRRSRSRSRSVDSRSPAHSPSPRRSPSPHKSMSPERSASPRSPRGESPDNRSRDGRSLSPRSVSPRGRPDASRSPSPRNSNDE 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123268g00001 302 SUPERFAMILY RNA-binding domain, RBD 43 137 IPR035979 GO:0003676
Stsc123268g00001 302 MobiDBLite consensus disorder prediction 138 302 - -
Stsc123268g00001 302 MobiDBLite consensus disorder prediction 232 264 - -
Stsc123268g00001 302 Gene3D - 33 139 IPR012677 -
Stsc123268g00001 302 SMART rrm1_1 53 126 IPR000504 GO:0003723
Stsc123268g00001 302 CDD RRM_SRSF2_SRSF8 54 126 - -
Stsc123268g00001 302 MobiDBLite consensus disorder prediction 159 231 - -
Stsc123268g00001 302 FunFam Serine/arginine-rich splicing factor SC35 40 139 - -
Stsc123268g00001 302 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 50 292 - -
Stsc123268g00001 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 124 IPR000504 GO:0003723
Stsc123268g00001 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
Stsc123268g00001 302 SMART rrm2_1 53 126 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123268g00001 Stsc-Chr123268 775 6300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123268g00001 49 128 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 1.14e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc123268g00001 K12891 - gmx:100778928 292.737