Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123257g00001 ATGACTTCCACTAATTATTTTTGGGAAACATCATTATCACACCATGATGATAATCCATCCCAAAATCTAAGCTTCCAAACATATTCCAACAACAATTTTGATGATGATTCTCTTTCTTTTGATATCATTGACTTCTCCATACACTCACAACAACAAGTCCCAACAATAGATAATAACAACAACAATAACAACAATTACATGGAGCAAAATGCAAAGAACGAGAAGCATGAAGAAGAAGATAAGGTTCTTCACCACGGTGAAAAAGGAAAGTATATAGGTGTAAGAAAAAGGCCATGGGGAAAATTCGCGGCCGAAATTCGAGACACAACAAGGAAAGGAACAAGGGTTTGGCTTGGAACCTTTGATAGTGCTGAAGATGCCGCTTTGGCTTATGATCAAGCTGCATTTGCCATGAGAGGATACAATGCTGTTCTAAATTTTCCAGTGCAAAGGGTCAAAGAATCCTTGCAAGGAATTGAGTATGGTTATGGCATCAACAACAAAGGGTATTCACCAGCACTTGCACTCAAAGAGAGGAACTGCATGAGAAGAAAAATGTCATCATCATCATCAAAGGGAAAAGGGAAAAGTGAAGAATCATCGTCATCAAGTAGTAGTGTGATGGAGTTAGAAGACTTGGGAGTTGAATATCTTGAACAACTTCTAAGCATTTCGGATAATCAAG 685 0.381 MTSTNYFWETSLSHHDDNPSQNLSFQTYSNNNFDDDSLSFDIIDFSIHSQQQVPTIDNNNNNNNNYMEQNAKNEKHEEEDKVLHHGEKGKYIGVRKRPWGKFAAEIRDTTRKGTRVWLGTFDSAEDAALAYDQAAFAMRGYNAVLNFPVQRVKESLQGIEYGYGINNKGYSPALALKERNCMRRKMSSSSSKGKGKSEESSSSSSSVMELEDLGVEYLEQLLSISDNQ 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123257g00001 228 Pfam AP2 domain 90 140 IPR001471 GO:0003700|GO:0006355
Stsc123257g00001 228 SUPERFAMILY DNA-binding domain 90 149 IPR016177 GO:0003677
Stsc123257g00001 228 MobiDBLite consensus disorder prediction 185 208 - -
Stsc123257g00001 228 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Stsc123257g00001 228 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Stsc123257g00001 228 PANTHER DNA-BINDING DOMAIN 50 223 IPR044808 GO:0003700|GO:0009873
Stsc123257g00001 228 FunFam Ethylene-responsive transcription factor 2 90 150 - -
Stsc123257g00001 228 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Stsc123257g00001 228 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Stsc123257g00001 228 MobiDBLite consensus disorder prediction 54 77 - -
Stsc123257g00001 228 Coils Coil 59 79 - -
Stsc123257g00001 228 Gene3D AP2/ERF domain 89 150 IPR036955 GO:0003700|GO:0006355
Stsc123257g00001 228 MobiDBLite consensus disorder prediction 54 69 - -
Stsc123257g00001 228 CDD AP2 90 150 IPR001471 GO:0003700|GO:0006355
Stsc123257g00001 228 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123257g00001 Stsc-Chr123257 2545 3229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123257g00001 91 227 AP2-EREBP Transcription Factor Family AT3G23240 56.934 1.43e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc123257g00001 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc123257g00001 K14516 - gmx:100782036 165.622