Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123254g00001 ATGATGAAGAAGTGCGAACTGTGCAAGGTTAGAGCTACGACTTTCTGCGAGTCGGACCAGGCTAACTTATGCTGGACCTGCGACGCTAATGTTCACGGTGCTAACTTCCTTGTCGCTAGGCACTCTAGGACGCTCCTCTGCCGCCACTGTTACTCACCTACGCCGTGGAAAGCCTCCGGCCCCGCACTCCTTAACGCCGTTGCCCTCTGCCTCCGCTGTTCCAATGGAGAACAAGGAAAACCAGAAGAAGGTGAGAGCGAAGGAGAGAATAACGAAGCGACAGAAATGGATGAAGACGACAACGAAGAAAATCAGGTTGTACCTTGGTCCTCCTCTACCACCCCGCCGGAGCCTTCGAGTTCCTCCGGCAGCGAAAAGTCGGCGATCGGCGAGGGAGATGGTTTGGACCTGGGGACGTCGTTGAAATGA 429 0.5501 MMKKCELCKVRATTFCESDQANLCWTCDANVHGANFLVARHSRTLLCRHCYSPTPWKASGPALLNAVALCLRCSNGEQGKPEEGESEGENNEATEMDEDDNEENQVVPWSSSTTPPEPSSSSGSEKSAIGEGDGLDLGTSLK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123254g00001 142 Pfam B-box zinc finger 3 43 IPR000315 GO:0008270
Stsc123254g00001 142 SMART bboxneu5 1 46 IPR000315 GO:0008270
Stsc123254g00001 142 MobiDBLite consensus disorder prediction 76 142 - -
Stsc123254g00001 142 MobiDBLite consensus disorder prediction 88 104 - -
Stsc123254g00001 142 CDD Bbox1_BBX-like 4 46 - -
Stsc123254g00001 142 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Stsc123254g00001 142 MobiDBLite consensus disorder prediction 105 127 - -
Stsc123254g00001 142 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123254g00001 Stsc-Chr123254 2908 3336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123254g00001 1 106 C2C2-CO-like Transcription Factor Family AT4G27310 46.789 6.90e-26 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc123254g00001 zf-B_box 8.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc123254g00001 - - vun:114168631 136.346