Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123228g00001 GAAACTGAAATGGCTGATAGTGTGGTGAGTAGCATTGTTTCTTTTGCTGTGGATAACTTGACAAGGCTACTCGTTGATGAAGTCAATTTACTTTCTGGTGTGAAAGATGATATTACTTCTCTACGCAACGATCTCGAGTTCATGCTAGCCTTCCTCAAGAACTCTGAGGGGAAGCGAAACAATGAATTGGTGAAAGTGACGGTGAATCAGATTAGACAAGTGGTTTTCCAGTCCGAGGACGCCATTGATACGTATGTTGTCAAAGTTGCCAGGCACAAAAGCTTAAACAAGTTGCGGAGGTGCTTTCACTGCGTAGGCCATGTGGCGATGCTCCACGAGGTGAATGCTCAGGTTAAAGCAATCAAGTCCACTCTTGAAGGTATCTATAAAAACAAAGCCATTTATGGCATTGATGAAATGGATTTCAAGAGTAGTGGTGCTACAGAAAGAGCTGGTGCAGAATATCTTCAAAGGAGAAGGAGGGATGTGGAAGAAAAAGAAGTGGTGGGGTTGGTGAATGAGTCCAATGTTGTTATTGAGAAGCTCATGGAGAGAGATCCTAATCTTAATGTGGTTTCCATAATTGGCATGGGTGGGTTGGGAAAGACCACCCTTGCTAAGAAGGTCTACAACAAGGATGAGGTGAAGGGCATGTTCTCTTGCTGTGCATGGAGTTATGTGTCCAATGATTACATCATTAGAGATCTACTTTTGAGCCTTTTGAAATGTTTGAAGCCATCCATAGTTGAATGTAAAGATTTGAGTGTGGAGGAACTGAAGGAACAGCTAAGTGAATGGTTGAAGGGGAAGAAGTATGTGGTGGTGCTTGATGACATTTGGAAAACTCAGGTATGGGACGAGTTAAGAGGGGCATTTCCGAATGACGGAAATGGGAGCAGAATAATTATAACAAGTCGTCTGAGAGAGGTGGCATTGTACAGTCGCGCATCCTTTGTGTATGAGCTTCCCTTCCTTGATGAAGAAGCAAGCTGGAAACTCTTCTCCAAGAAGATCTTTGGAGATAAAGAGTGCCTATGTGAACTAGAGCCGCTTGGTCGAACAATGGCTACAAATTGTAAGGGATTACCCCTTGCCATTGTAGTGTTAGCGGGGCTAGTTGCAAAAAAAGAGCAGTCAGAAAGAGAATGGCGTAGAATCAAGAGTAATGTCAATAGGCATCTGGCTCAAGACAAGATAGTGGAAGATGTATTGAAGCTTAGCTATGATGACTTGCCTCCAAAATTGAGGCCTTGCTTTCTGTATTTGGGGATGTATCCTGAAGATTATGAGATACCTGTGAGGGAATTGCTTCGACTGTGGATAGCTGAAGGTTTCATACAATTAGATGCAACTGGAACCTCGAATGCACCACCCGAACCGGAAGATGTTGCTGACAGCTTCTTGGATGAACTTGTAGAACGGAGCTTGGTGCAAGTGGCAAGTAGGAGGAGTGATGGGGGTGTGAAGACATGTAGAGTCCATGATCTTCTGCGCGATCTCTGCATTTTAGAGAGCAAAGAAAACAAGTTTATGGAAGTGTGCAGGGAGTTGGATACTAACAAGTGCAATCCTCATAGGATGTCTCTTCAGTATACAACAACTAAATTTTGGTCAACCAAAAAAGACCAATCACATGCACATACGCGTTCTTTGCTCCTTTTTGGTGAACGGATTAAAGACCAAACAAAAGTGTGGAATCAGGTAAGGAATAACTTCAAGTTGGCTCGTGTATTGGACATGAATCAAGCGGTGTTATGTTCATCACCTAGTGGATTGAAGACATTGATCCATATAAGATACTTGAAAGTGAAAATAGAGAATTTTAGAAATTCAAATGATGTTTTGACTTCTATATGCAATCTTTGGAATCTAGAAACGCTCTATTTAAGGCTTTATAGCGGTAAGGTTGATTCTTTTACTCTACCAGCCAAATTATGGAAGCTCAAGTCACTCAGGCATATTTATTTGAAATATGATGGCATATCATTTTATAAACCAGCATCAGTGTCAAAGATGAAAAATGGAGAAACAAGGGTGGACAATCTCCAAACTCTGGGTGATCTCTTTCTCGATACACGAGTAGCAAACGTCCTAAACGAGGGTATGTTTCCCAACTTGAAAAAATTGACTTTATATGGAGTGCAAATAAAAGGAGAAGAAGAAGAATTACTAGGGAAAGCTCTCCAATGCCTAAACAAACTTGTTACGCTAAAGCTAATTGGCATCAGGGAGACTCCATTAGATCCGAATGTGTTTCCTACAAGTCTTACCAAGATTACCATCAGACACTTTTTTCATACGGATTCGAGATTTATCAAGACTCTGGGAAAACTTCCCAACCTCCAAATCTTAAAACTATTCGATGGAGAGATAGCTGAAGATGTTAATTGTGCAGCTGGGGACTTCCCACAGCTTCAATTTCTACAAGTGAAAGGCCTCCGTAACAGTGGCAGTTGGAAAATAGAGCAAGGAGCTATGCCTCACATTCGACAATGCAATATCCCTGAGAACATGCTTATCCGTGACTAA 2529 0.4164 ETEMADSVVSSIVSFAVDNLTRLLVDEVNLLSGVKDDITSLRNDLEFMLAFLKNSEGKRNNELVKVTVNQIRQVVFQSEDAIDTYVVKVARHKSLNKLRRCFHCVGHVAMLHEVNAQVKAIKSTLEGIYKNKAIYGIDEMDFKSSGATERAGAEYLQRRRRDVEEKEVVGLVNESNVVIEKLMERDPNLNVVSIIGMGGLGKTTLAKKVYNKDEVKGMFSCCAWSYVSNDYIIRDLLLSLLKCLKPSIVECKDLSVEELKEQLSEWLKGKKYVVVLDDIWKTQVWDELRGAFPNDGNGSRIIITSRLREVALYSRASFVYELPFLDEEASWKLFSKKIFGDKECLCELEPLGRTMATNCKGLPLAIVVLAGLVAKKEQSEREWRRIKSNVNRHLAQDKIVEDVLKLSYDDLPPKLRPCFLYLGMYPEDYEIPVRELLRLWIAEGFIQLDATGTSNAPPEPEDVADSFLDELVERSLVQVASRRSDGGVKTCRVHDLLRDLCILESKENKFMEVCRELDTNKCNPHRMSLQYTTTKFWSTKKDQSHAHTRSLLLFGERIKDQTKVWNQVRNNFKLARVLDMNQAVLCSSPSGLKTLIHIRYLKVKIENFRNSNDVLTSICNLWNLETLYLRLYSGKVDSFTLPAKLWKLKSLRHIYLKYDGISFYKPASVSKMKNGETRVDNLQTLGDLFLDTRVANVLNEGMFPNLKKLTLYGVQIKGEEEELLGKALQCLNKLVTLKLIGIRETPLDPNVFPTSLTKITIRHFFHTDSRFIKTLGKLPNLQILKLFDGEIAEDVNCAAGDFPQLQFLQVKGLRNSGSWKIEQGAMPHIRQCNIPENMLIRD 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123228g00001 842 CDD RX-CC_like 11 128 IPR038005 -
Stsc123228g00001 842 PANTHER DISEASE RESISTANCE PROTEIN RP 43 810 IPR044974 GO:0006952
Stsc123228g00001 842 Gene3D - 414 502 IPR036388 -
Stsc123228g00001 842 Gene3D - 148 317 IPR027417 -
Stsc123228g00001 842 Gene3D - 12 115 - -
Stsc123228g00001 842 PRINTS Disease resistance protein signature 266 280 - -
Stsc123228g00001 842 PRINTS Disease resistance protein signature 359 373 - -
Stsc123228g00001 842 PRINTS Disease resistance protein signature 191 206 - -
Stsc123228g00001 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 422 IPR027417 -
Stsc123228g00001 842 Pfam NB-ARC domain 176 409 IPR002182 GO:0043531
Stsc123228g00001 842 SUPERFAMILY L domain-like 493 837 - -
Stsc123228g00001 842 FunFam Probable disease resistance protein At1g63360 408 503 - -
Stsc123228g00001 842 Gene3D - 324 412 IPR042197 -
Stsc123228g00001 842 Pfam Rx N-terminal domain 12 97 IPR041118 -
Stsc123228g00001 842 FunFam Probable disease resistance protein At1g61300 152 317 - -
Stsc123228g00001 842 Gene3D Ribonuclease Inhibitor 516 841 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123228g00001 Stsc-Chr123228 3052 5775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123228g00001 179 500 WRKY Transcription Factor Family AT5G45050 27.976 1.43e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc123228g00001 - - aip:107635641 895.96