Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc123145g00001 ATGGAATTGGGAGTTCCAAGTAAGCAGCCCTCGAATTATTTTTGCAAGACCTTAACGGCTAGTGACACCAGCACACATGGAGGGTTTTCCGTTCCACGTCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGAAATCCAAAGTCCAAATTATTATGGTGTTTTCTGGAGTGGAAAAAGCTCTGTACAGATAGAGCTTAGCAAGGACAACCAAAGAGGCACCTTCTTACTACCGGCTAGAGTGTATTTGTTAGTGCCAAAAGACTCGTGGCAGGAGATTCTAAATGAAAAGAATCAGCTTCTTTTGGGAATTCGTCGTGCTAATAGACCACAGACTATAATGCCTTCATCAGTTCTATCCAGTGACAGTATGCATATTGGGCTTCTTGCAGCTGCTGCACATGCTGCAGCAACTAATAGTTGTTTCACAGTGTTCTATAATCAAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCGAAGTATATCAAAGCTGTATACCATACACGTGTTTCTGTCGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGGAGGTACATGGGTACAATAACTGGAATAAGTGACTTGGATCCAGTTCGATGGCCAAATTCTCATTGGCGATCTGTAAAGGTTGGTTGGGATGAATCCACAGCAGGAGATAGGCAGCCACGAGTATCGTTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCATCACTATTCCCGCTCAGATTGAAACGTCCATGGCATCCTGGCACCTCATCTTTCCTTGATCGTGTTACAGATGGCAGAGATGATCCGACTAATGGGCTGATGTGGCTCAGAGGTGGAACTGGCGACCAAGGTCTGAATTCCCTCAATTTTCAAAGTGTGGGTATGCTGCCATGGATGCAGCAGAGGCTTGATCTGGCTTTGCTTGGAAATGATCATAATCAGCAGTACCAAGACATGTTAGCAGCTGGTTTGCAGAACATAGGGAGTGGAGAACTCTTGAGGCAACAAATGATGAATTTCCAACAGCCTTTCAATTATCTCCAACAATCAGGAAATGTCAACACTCCTATCCAGCTTCAGCAGCAGCAAACGATTCAGCAAGCAGCGACTTCTAATATCTTGCAACCACAAGCCCAAGTATTGACGGAGAACATGTCTCAGCAGCTCTTTCAGAAACCACATAACAACCGAGAAGACCATGCGCAGCAGCATCAGCATCAGCAGCACACTTATCAGGATGCACTTTTAGTTCAGAGTGACCAGCTCCACCAAAGGCAACACTCTAGTTTGCCTTCACCATCGTACTCGAAACCCGAGTTTGCAGATTCAAGCATTAAGTTTGAAGGATCAGGTTCACCAGGACAGAACATGCTTGGTTCACTTTGTCCTGAAGGGAGCAGCAATCTCTTGAACTTATCTAGAGGTGGTCAGTCCATACCAACAGAACAGTTATCCCAACAATCGTGGCCCCCGAAGTATACACCTCTTAGGACAGACATTTGTTCTACTAGTTTGTAA 1530 0.4497 MELGVPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLEIQSPNYYGVFWSGKSSVQIELSKDNQRGTFLLPARVYLLVPKDSWQEILNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNQRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDRVTDGRDDPTNGLMWLRGGTGDQGLNSLNFQSVGMLPWMQQRLDLALLGNDHNQQYQDMLAAGLQNIGSGELLRQQMMNFQQPFNYLQQSGNVNTPIQLQQQQTIQQAATSNILQPQAQVLTENMSQQLFQKPHNNREDHAQQHQHQQHTYQDALLVQSDQLHQRQHSSLPSPSYSKPEFADSSIKFEGSGSPGQNMLGSLCPEGSSNLLNLSRGGQSIPTEQLSQQSWPPKYTPLRTDICSTSL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc123145g00001 509 MobiDBLite consensus disorder prediction 425 499 - -
Stsc123145g00001 509 Gene3D - 12 106 IPR015300 -
Stsc123145g00001 509 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 46 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc123145g00001 509 MobiDBLite consensus disorder prediction 425 443 - -
Stsc123145g00001 509 Pfam Auxin response factor 131 214 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc123145g00001 509 MobiDBLite consensus disorder prediction 452 499 - -
Stsc123145g00001 509 FunFam Auxin response factor 169 241 - -
Stsc123145g00001 509 Gene3D - 169 241 - -
Stsc123145g00001 509 SUPERFAMILY DNA-binding pseudobarrel domain 3 134 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc123145g00001 Stsc-Chr123145 1897 5967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc123145g00001 1 496 B3 DNA Binding Superfamily AT5G37020 60.980 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc123145g00001 - - adu:107473768 801.201