Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122g00012 ATGACTCCAAAGGCAGAAATGGAGTTCGCAGTTGAAGTGGAAGTACTTGGAAGGGTTAGGCATAAGAATTTGTTAGGTTTGAGGGGTTTCTATGCTGGAGGAGATGAAAGGTTAATTGTTTATGATTTCATGCCTAATCAAAGCTTGCTCACACATTTGCACGGTCACCTTTCTTCTAATTGTCTCTTAGATTGGCCTAAACGAATGAACATAGCAATTGGTGCAGCTGAAGGCTTAACGTACTTGCACCATGAGGCAAATCCTCACATCATTCATAGAGACATAAAAGCAAGCAATGTTTTGTTAGACCTTGAATTCCAAGCTAAGGTAGCTGATTTTGGTTTCGCGAAGCTGATACCGGAGGGTGTAAGCCATCTAACAACAAGGGTTAAAGGAACACTGGGATATCTGGCACCGGAATACGCCATGTGGGGTAAAGTCTCAGAGAGTTGTGATGTTTACAGCTTTGGGATTCTTCTTTTGGAGATTGTGAGTGCCAAGAAACCAATTGAGAAGCTATCGGGTGGAGTGAAAAGGGACATTGTTCAATGGGTGACACCTTATTTCCAAAAGGGTGCATTCAATCACATTGCGGATTCGAAGCTGAAGGGGAAGTTTGATTTGGATCAGTTGAAATCTGTGGTGATGATAGCTCTGAGATGCACGGATGGTAGCCCTGAGAAGAGGCCTAGCATGGCAGAGGTTGTGGATTGGCTTAAGGGTGCTGCAGGGAAGAGTAGAAGAAGAGAGGTTACTACTCCTCTAAGCTTGGGTTACAAGAACAATGGTGATGGTGATGAACAGGATGACGATGATTACGGAGAGATTAGACCATACCCATCCAAATTGAAAGTGGCAACTGATAGTGATAGGCATAAGAGAAGATGA 888 0.4358 MTPKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDFMPNQSLLTHLHGHLSSNCLLDWPKRMNIAIGAAEGLTYLHHEANPHIIHRDIKASNVLLDLEFQAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSAKKPIEKLSGGVKRDIVQWVTPYFQKGAFNHIADSKLKGKFDLDQLKSVVMIALRCTDGSPEKRPSMAEVVDWLKGAAGKSRRREVTTPLSLGYKNNGDGDEQDDDDYGEIRPYPSKLKVATDSDRHKRR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122g00012 295 Pfam Protein tyrosine and serine/threonine kinase 4 237 IPR001245 GO:0004672|GO:0006468
Stsc122g00012 295 FunFam PTI1-like tyrosine-protein kinase At3g15890 44 254 - -
Stsc122g00012 295 ProSitePatterns Serine/Threonine protein kinases active-site signature. 90 102 IPR008271 GO:0004672|GO:0006468
Stsc122g00012 295 MobiDBLite consensus disorder prediction 274 288 - -
Stsc122g00012 295 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 5 256 - -
Stsc122g00012 295 ProSiteProfiles Protein kinase domain profile. 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122g00012 295 MobiDBLite consensus disorder prediction 246 295 - -
Stsc122g00012 295 Gene3D Transferase(Phosphotransferase) domain 1 45 253 - -
Stsc122g00012 295 Gene3D Phosphorylase Kinase; domain 1 2 44 - -
Stsc122g00012 295 SUPERFAMILY Protein kinase-like (PK-like) 7 247 IPR011009 -
Stsc122g00012 295 SMART serkin_6 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122g00012 Stsc-Chr122 87530 89309 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122g00012 3 240 Receptor kinase-like Gene Family AT4G02010 45.868 1.68e-68 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Stsc122g00012 Pkinase 2.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122g00012 - - lang:109335602 463.381