Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122g00011 ATGTACAAGAAATGTTTCTGTTGTTTACTATCTGAAGAAGAGCAAAGCAAAGCACGGAATAAAGGAGAAAAGAATAAGAATAAGGATTATCCATGGGAAATCTACACATCGAAGGAGTTGCTTCGTGCAACAAACAATTTTCATCAAGATAACAAGATTGGAGAGGGTGGATTTGGAAGTGTCTATTGGGGTCGAACAAGTAAAGGCGTCGAGATTGCAGTGAAGCGGTTGAAAACGATGACTCCAAAGGCAGAAATGGAGTTCGCAGTTGAAGTGGAAGTACTTGGAAGGGTTAGGCATAAGAATTTGTTAGGTTTGAGGGGTTTCTATGCTGGAGGAGATGAAAGGTTAATTGTTTATGATTTCATGCCTAATCAAAGCTTGCTCACACATTTGCACGGTCACCTTTCTTCTAATTGTCTCTTAGATTGGCCTAAACGAATGAACATAGCAATTGGTGCAGCTGAAGGCTTAACGTACTTGCACCATGAGGCAAATCCTCACATCATTCATAGAGACATAAAAGCAAGCAATGTTTTGTTAGACCTTGAATTCCAAGCTAAGGTAGCTGATTTTGGTTTCGCGAAGCTGATACCGGAGGGTGTAAGCCATCTAACAACAAGGGTTAAAGGAACACTGGGATATCTGGCACCGGAATACGCCATGTGGGGTAAAGTCTCAGAGAGTTGTGATGTTTACAGCTTTGGGATTCTTCTTTTGGAGATTGTGAGTGCCAAGAAACCAATTGAGAAGCTATCGGGTGGAGTGAAAAGGGACATTGTTCAATGGGTGACACCTTATTTCCAAAAGGGTGCATTCAATCACATTGCGGATTCGAAGCTGAAGGGGAAGTTTGATTTGGATCAGTTGAAATCTGTGGTGATGATAGCTCTGAGATGCACGGATGGTAGCCCTGAGAAGAGGCCTAGCATGGCAGAGGTTGTGGATTGGCTTAAGGGTGCTGCAGGGAAGAGTAGAAGAAGAGAGGTTACTACTCCTCTAAGCTTGGGTTACAAGAACAATGGTGATGGTGATGAACAGGATGACGATGATTACGGAGAGATTAGACCATACCCATCCAAATTGAAAGTGGCAACTGATAGTGATAGGCATAAGAGAAGATGA 1125 0.4267 MYKKCFCCLLSEEEQSKARNKGEKNKNKDYPWEIYTSKELLRATNNFHQDNKIGEGGFGSVYWGRTSKGVEIAVKRLKTMTPKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDFMPNQSLLTHLHGHLSSNCLLDWPKRMNIAIGAAEGLTYLHHEANPHIIHRDIKASNVLLDLEFQAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSAKKPIEKLSGGVKRDIVQWVTPYFQKGAFNHIADSKLKGKFDLDQLKSVVMIALRCTDGSPEKRPSMAEVVDWLKGAAGKSRRREVTTPLSLGYKNNGDGDEQDDDDYGEIRPYPSKLKVATDSDRHKRR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122g00011 374 MobiDBLite consensus disorder prediction 325 374 - -
Stsc122g00011 374 MobiDBLite consensus disorder prediction 353 367 - -
Stsc122g00011 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Stsc122g00011 374 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Stsc122g00011 374 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 335 - -
Stsc122g00011 374 SUPERFAMILY Protein kinase-like (PK-like) 29 326 IPR011009 -
Stsc122g00011 374 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122g00011 374 ProSiteProfiles Protein kinase domain profile. 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122g00011 374 Pfam Protein kinase domain 47 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122g00011 374 Gene3D Phosphorylase Kinase; domain 1 9 122 - -
Stsc122g00011 374 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Stsc122g00011 374 FunFam PTI1-like tyrosine-protein kinase At3g15890 123 333 - -
Stsc122g00011 374 FunFam PTI1-like tyrosine-protein kinase At3g15890 19 122 - -
Stsc122g00011 374 CDD STKc_IRAK 53 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122g00011 Stsc-Chr122 87530 89364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122g00011 35 347 Receptor kinase-like Gene Family AT1G60800 43.810 1.15e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Stsc122g00011 Pkinase 4.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122g00011 - - gmx:100817283 586.645