Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122970g00001 ATGATGAAGAGGGAAAGAGAGGTGATTGAAAGCATAACCATGGCGAATTGCTTGATGCTACTATCTAGAGGAAGTGATGATGATCATCAATTTGAGGCCACATATTCTTCAAGCTTTTCTTCTTCTTCCAACAACAACCGTGTATTTGAGTGCAAAACATGTAAGAGGCAATTCCCTTCATTTCAAGCACTTGGTGGGCATAGAGCTAGTCACAAGAAGCCAAGGTTGATGGATAATAATAATAATGATGATGATCACGGTGGAAAATTGGAAGAACAACAACAATTATTGGAACCTCAAAAGCCTAAGACTCATGAATGTTCCATTTGTGGCTTGGAATTTGCAATTGGTCAAGCATTAGGTGGACATATGAGGAGGCATAGAACTACTTCAAATTTGAATAATAATAATAATAATAATAATTCTTCTATTGTTATGAGTAGTAGTAGTGGTGGTGGTAGTAGCACTACTAGCCTTGAGTCTTCACCAAATGGGATATCAAAGAACAACAACAAGAAGAGGGTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGCAGATTTTGAAGATTGGAAATTTTTTGTGTTGA 600 0.365 MMKREREVIESITMANCLMLLSRGSDDDHQFEATYSSSFSSSSNNNRVFECKTCKRQFPSFQALGGHRASHKKPRLMDNNNNDDDHGGKLEEQQQLLEPQKPKTHECSICGLEFAIGQALGGHMRRHRTTSNLNNNNNNNNSSIVMSSSSGGGSSTTSLESSPNGISKNNNKKRVLVLDLNLTPFENDLQILKIGNFLC 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122970g00001 199 MobiDBLite consensus disorder prediction 64 88 - -
Stsc122970g00001 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Stsc122970g00001 199 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Stsc122970g00001 199 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Stsc122970g00001 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Stsc122970g00001 199 SMART c2h2final6 105 127 IPR013087 -
Stsc122970g00001 199 SMART c2h2final6 49 71 IPR013087 -
Stsc122970g00001 199 SUPERFAMILY beta-beta-alpha zinc fingers 47 127 IPR036236 -
Stsc122970g00001 199 Pfam C2H2-type zinc finger 105 129 - -
Stsc122970g00001 199 Pfam C2H2-type zinc finger 48 74 - -
Stsc122970g00001 199 PANTHER ZINC FINGER PROTEIN ZAT5 10 187 - -
Stsc122970g00001 199 MobiDBLite consensus disorder prediction 71 88 - -
Stsc122970g00001 199 MobiDBLite consensus disorder prediction 127 169 - -
Stsc122970g00001 199 Gene3D Classic Zinc Finger 47 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122970g00001 Stsc-Chr122970 1900 2627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122970g00001 2 198 C2H2 Transcription Factor Family AT2G28710 39.500 1.97e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc122970g00001 zf-C2H2_6 1.9e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122970g00001 - - adu:107486331 248.054