Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122966g00002 ATGTTTGGGAGGGCGCCAAAGAAGAGCGATAACACCAAGTACTATGAGATCCTCGGAGTATCGAAGGACTCTTCTCAGGACGATTTGAAGAAGGCTTACAAGAAAGCCGCCATCAAGAATCATCCTGACAAAGGAGGTGACCCTGAGAAGTTTAAAGAGCTAGCACATGCTTATGAGGTGCTGAGTGATCCAGAGAAGCGTGAGATTTATGATCAATATGGTGAAGACGCACTTAAGGAAGGAATGGGTGGTGGTGGCGGAGGCCATGATCCATTTGATATCTTCCAGTCTTTCTTCGGGGGGAGTGCATTTGGTGCCGGTTAG 324 0.4784 MFGRAPKKSDNTKYYEILGVSKDSSQDDLKKAYKKAAIKNHPDKGGDPEKFKELAHAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFQSFFGGSAFGAG 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122966g00002 107 CDD DnaJ 14 63 IPR001623 -
Stsc122966g00002 107 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Stsc122966g00002 107 FunFam dnaJ protein homolog 10 107 - -
Stsc122966g00002 107 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 102 IPR044713 GO:0006457|GO:0030544
Stsc122966g00002 107 Pfam DnaJ domain 13 71 IPR001623 -
Stsc122966g00002 107 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Stsc122966g00002 107 PRINTS DnaJ domain signature 15 33 IPR001623 -
Stsc122966g00002 107 PRINTS DnaJ domain signature 46 66 IPR001623 -
Stsc122966g00002 107 PRINTS DnaJ domain signature 66 85 IPR001623 -
Stsc122966g00002 107 Gene3D DnaJ domain 10 107 IPR036869 -
Stsc122966g00002 107 SMART dnaj_3 12 66 IPR001623 -
Stsc122966g00002 107 SUPERFAMILY Chaperone J-domain 8 104 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122966g00002 Stsc-Chr122966 8305 8941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122966g00002 8 78 C2H2 Transcription Factor Family AT1G74250 42.500 2.42e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122966g00002 K09503 - zju:107413164 182.956