Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122966g00001 ATGGGTGTCTCTGGGAAATGGATTAGATCATTAATTGGTCTAAAGAAGTCGGAAAAGGCACAGTCTTCAGAGAAGGACCAAAATAAGGTTGGCAAGTCTCGGCATCAAAGAAAGCATTCGATTCAATTTGATAATGGTAAACTTCAAAATGACCTTGATGATGATGTGACTCTAGCTATCAGAGATGATAATGATTGTTCAAACCCTGATGCCCATTATTCACCTTCTGCTTCTCAACAAGCTCTTGATACTGCTCATAATCACCAAACAATGAGGGAAGAATGGGCTGCCATGAGGGAAGAATGGGCTGCCATTCGCATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCACTTAGAGCTTTGAAAGGATTGGTAAGGCTTCAGGCCCTTGTAAGAGGCCATGCCGTGAGAAAACAAGCTGCAATAACATTGCGTTGCATGCAAGCTTTGGTGAGGGTTCAGGCTCGTGTTCGGGCAAGGCGTGTCCGTTTGGCATTGGAGAGTCAAAATGAACAACAGAAAGTTCAGCAGCAGCTTGCAAATGAAGCTCGTGTTCGAGAAATAGAAGAAGGCTGGTGTGACAGTGTGGGATCTGTAGAAGAAATCCAAGCTAAAATATTGAAGAGGCAGGAGGCTGCAGCTAAACGTGAGAGAGCCATGGCATATGCTTTAGCTCATCAGTGGCAGGCAGGATCAAGACACCAGGCTGCTTCATCTGGATTTGAACCAGATAAAAGTAGCTGGGGCTGGAATTGGTTGGAAAGATGGATGGCTGTCCGTCCTTGGGAGAATCGTTTTGTTGACACTAGTCTAAGGGAGGGAGCAATGGTGCCTGAAAATGGAGCAATAGATGGTAAAAATGGAACTGGTTCTAACAGCAAACCAATTCTATCAAACAATCATCAAAACTCTGCAAGTCAGAAAACTGGACCAATTCTTTCCAATGGCTGTGGTTCTTCACCTGGTAAGTCAGCAGGCTTGCAGGAATCATCGAACACACAGGCTGCTAAGCCAAATGGTGAAAATGCTATTGAAGAAGCCAATTCAAAACCCAGGATTGGGTCAAGATCTTGTAGTAATCCAAAGGAGAGAACCTCGCAAGCAGATAAGCAGGCCAAAAAACGATTATCTCTTCCTAACAGTGGGGGTGGTCCTGGGGCTCAAACAGCAAGACATCCTAATAGAACAAATGTCAAAGGGACGCCCAACGCGCAAAAGCCTGGTAGGGATAAACCTAATGCCAACGGAAGAGGGAATGTAAATCTTACTCAGTCAGTTCCACAGCATGCAGGTACGTAG 1305 0.4513 MGVSGKWIRSLIGLKKSEKAQSSEKDQNKVGKSRHQRKHSIQFDNGKLQNDLDDDVTLAIRDDNDCSNPDAHYSPSASQQALDTAHNHQTMREEWAAMREEWAAIRIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQNEQQKVQQQLANEARVREIEEGWCDSVGSVEEIQAKILKRQEAAAKRERAMAYALAHQWQAGSRHQAASSGFEPDKSSWGWNWLERWMAVRPWENRFVDTSLREGAMVPENGAIDGKNGTGSNSKPILSNNHQNSASQKTGPILSNGCGSSPGKSAGLQESSNTQAAKPNGENAIEEANSKPRIGSRSCSNPKERTSQADKQAKKRLSLPNSGGGPGAQTARHPNRTNVKGTPNAQKPGRDKPNANGRGNVNLTQSVPQHAGT 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122966g00001 434 MobiDBLite consensus disorder prediction 280 434 - -
Stsc122966g00001 434 Gene3D - 101 142 - -
Stsc122966g00001 434 MobiDBLite consensus disorder prediction 287 341 - -
Stsc122966g00001 434 ProSiteProfiles IQ motif profile. 124 151 IPR000048 GO:0005515
Stsc122966g00001 434 PANTHER IQ-DOMAIN 5-RELATED 1 386 - -
Stsc122966g00001 434 SMART iq_5 99 121 IPR000048 GO:0005515
Stsc122966g00001 434 SMART iq_5 122 143 IPR000048 GO:0005515
Stsc122966g00001 434 MobiDBLite consensus disorder prediction 15 48 - -
Stsc122966g00001 434 MobiDBLite consensus disorder prediction 418 434 - -
Stsc122966g00001 434 MobiDBLite consensus disorder prediction 18 48 - -
Stsc122966g00001 434 ProSiteProfiles IQ motif profile. 100 128 IPR000048 GO:0005515
Stsc122966g00001 434 Pfam IQ calmodulin-binding motif 102 121 IPR000048 GO:0005515
Stsc122966g00001 434 FunFam IQ-domain 11 99 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122966g00001 Stsc-Chr122966 428 5352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122966g00001 1 419 IQD Protein Family AT3G22190 56.177 1.38e-121 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122966g00001 - - gmx:100787148 538.495