Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122865g00001 ATGTCTCAATTCCTGATTAGAATCATTTCTCCACCCAAACTTTTATCTTCTATCAACAATCCATTGCCATGGCTTTCTTCGAGACTCTTCTTCTCAACCCTTTCCTCTTCTTCTTCAAGTTCTACACTCAACAACTCTTTCACGGTCTCATACCTCGTCGGAACTTGCGGATTATCACCGGAACGCGCAGTTAACTATTCCAAGCGCTTCAGCTTCAAAACAAGAGAAAAGCCAGACACAGTCATTGCGTTCTTGAAGAACATGGGTCTATCCAAAACGGCGTCGTTCAGAGTAATCCAATCCGTTCCACATTTACTCGTAGCAAACCCTAAAATTCTTCAGGCAAAAATCGATTTTTTCGAGTCCAAAGGGTTTTCCACCTCTGACATATGCAAGATCATAGTAGGTTCCCCTTCAATCCTCACCCGAAGCTTGAAGAATGAAATCGCTCCCTCCTTCGATTTCTTCGACTCCATGTTTAAGTCTAGGCACAAGCTCATAAAAGCTGCTGTATCTTATTCTGCTTTGTTCTATGACTTTGCAAGGTTTATAGAACCTAATATAAAGCTCCTTAGAGAAGCTGGAGTTCCTGAATCAAAACTTGTTAGGTTAATAGAGTGTTTCCCCACCCAACTGAAGAATAGCCCTAAGGCGTTTAAGGAGGCATTGAAGGAAGTTAAGGAGATGAAGTTTGATCCCTTGAAGCTTCAATTTATTATGGCTATTCATGTGAAGCTGTATGTGAGAAAACCCACATGGGAAAGAAGGGAAGGTATTTATAGAAAGTGGGGTTGGACCGATGGCGATATTGTCACGGCTTTCAGACGCTATCCGTTGTGCTTCCTCACCGCGGACGAGAAGATTGAAGCAGTCATGGATTTTCTGGTGAATAAACTGGGTTATGCATCTTCTTGTGTTGCTAAGTCTCCGGTGGTGTTGAACATGAGTTTGAAAAGGAGAATCATTCCAAGGGGTTCTGTTTTTCTGTTTTTGCAGTCTAAGGGTCTGGTGAAGAATCCGGGCATGACTGCAATATTTATGATTGATGAAAAGACCTTCTTGAGAAGGTTCATCTTTTGCAAGAAGAAAGAAGCTGATGAGCTATTGAAGTTGTATCAAGCTAAATTGGCATAG 1134 0.418 MSQFLIRIISPPKLLSSINNPLPWLSSRLFFSTLSSSSSSSTLNNSFTVSYLVGTCGLSPERAVNYSKRFSFKTREKPDTVIAFLKNMGLSKTASFRVIQSVPHLLVANPKILQAKIDFFESKGFSTSDICKIIVGSPSILTRSLKNEIAPSFDFFDSMFKSRHKLIKAAVSYSALFYDFARFIEPNIKLLREAGVPESKLVRLIECFPTQLKNSPKAFKEALKEVKEMKFDPLKLQFIMAIHVKLYVRKPTWERREGIYRKWGWTDGDIVTAFRRYPLCFLTADEKIEAVMDFLVNKLGYASSCVAKSPVVLNMSLKRRIIPRGSVFLFLQSKGLVKNPGMTAIFMIDEKTFLRRFIFCKKKEADELLKLYQAKLA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122865g00001 377 Gene3D Transcription termination factor 3, mitochondrial 165 371 IPR038538 -
Stsc122865g00001 377 Pfam mTERF 83 234 IPR003690 GO:0003690|GO:0006355
Stsc122865g00001 377 Pfam mTERF 209 353 IPR003690 GO:0003690|GO:0006355
Stsc122865g00001 377 FunFam Mitochondrial transcription termination factor-like 145 365 - -
Stsc122865g00001 377 SMART mt_12 202 232 IPR003690 GO:0003690|GO:0006355
Stsc122865g00001 377 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Stsc122865g00001 377 SMART mt_12 167 197 IPR003690 GO:0003690|GO:0006355
Stsc122865g00001 377 SMART mt_12 96 126 IPR003690 GO:0003690|GO:0006355
Stsc122865g00001 377 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Stsc122865g00001 377 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Stsc122865g00001 377 PANTHER CGI-12 PROTEIN-RELATED 45 362 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122865g00001 Stsc-Chr122865 1071 2228 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc122865g00001 mTERF 6.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122865g00001 K15031 - qsa:O6P43_003532 294.664