Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122857g00001 ATGGAAGCTATACTTGGTTTTATCAAGCTTAGGATTAAGAGAGGTATTAATCTTGCAAAACGGGATGCTTTTTCAAGCGACCCTTATGTTATAGTCAAAATGGATGAACAGAAGCTGAAAACTCCGTTCATACGTAAAAATATTAATCCAGTATGGAATGAAGAATTGACTCTATACGTTAAAGATGTTGCAACTCCAATATATCTGCAAGTATTCGACAAAGACACGTTCACAGCAGACGATGAAATGGGGGATGCAGTTATAGACTTAAGGCCGTACATTGAGTGCCATTTGATGGGTTTGGAGAGGCTTCCAGATGGATGTGTTGTGAAGAGAATTCAACCAGATCGTATTAACTGTCTTGCTGATGAGAGCACTTGCTTTTGGCGGGATGGCAATATAGTCCAACATATGATTCTAAGATTGAAAAATGTTGAGTGTGGTGAAATTGAATGCGAAATTGAGTGGCGTGATATTCCTGGTTGTAATGGTTTAGCTGGACTAACATTATGA 513 0.386 MEAILGFIKLRIKRGINLAKRDAFSSDPYVIVKMDEQKLKTPFIRKNINPVWNEELTLYVKDVATPIYLQVFDKDTFTADDEMGDAVIDLRPYIECHLMGLERLPDGCVVKRIQPDRINCLADESTCFWRDGNIVQHMILRLKNVECGEIECEIEWRDIPGCNGLAGLTL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122857g00001 170 Pfam C2 domain 8 92 IPR000008 -
Stsc122857g00001 170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 157 IPR035892 -
Stsc122857g00001 170 Gene3D C2 domain 5 161 IPR035892 -
Stsc122857g00001 170 SMART C2_3c 7 102 IPR000008 -
Stsc122857g00001 170 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 162 IPR044562 -
Stsc122857g00001 170 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Stsc122857g00001 170 CDD C2_ArfGAP 5 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122857g00001 Stsc-Chr122857 2601 3331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122857g00001 38 166 C2H2 Transcription Factor Family AT1G70790 61.832 3.45e-56 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122857g00001 - - qsa:O6P43_032566 234.572